RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TMEM31Q5JXX7 168 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 WWC2Q6AWC2 1192 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 IQCEQ6IPM2 695 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 FAM129CQ86XR2 697 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 NETO2Q8NC67 525 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 COPS5Q92905 334 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 PAWRQ96IZ0 340 aaKnown RBP5.18□□□□□ -1.58
USP54-217ENST00000498213 ASB2Q96Q27 587 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 LGR4Q9BXB1 951 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 TEX13AQ9BXU3 409 aaPredicted RBP5.18□□□□□ -1.58
USP54-217ENST00000498213 RNF38Q9H0F5 515 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 AP5M1Q9H0R1 490 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 TMX4Q9H1E5 349 aaPredicted RBP5.18□□□□□ -1.58
USP54-217ENST00000498213 NKX2-4Q9H2Z4 354 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 CYP26B1Q9NR63 512 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 RTEL1Q9NZ71 1219 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP54-217ENST00000498213 NIP7Q9Y221 180 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP54-217ENST00000498213 HCFC2Q9Y5Z7 792 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 ARFGEF2Q9Y6D5 1785 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 CHD8Q9HCK8 2581 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 MEFVO15553 781 aaPredicted RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 ITGAVP06756 1048 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 NCAM1P13591 858 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 KIAA2012Q0VF49 1180 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 SLC9A5Q14940 896 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 DPP8Q6V1X1 898 aaPredicted RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 ZNF227Q86WZ6 799 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 MCF2L2Q86YR7 1114 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 DCP2Q8IU60 420 aaKnown RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 SP8Q8IXZ3 490 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 ZNF513Q8N8E2 541 aaPredicted RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 SUPT20HQ8NEM7 779 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 DIS3LQ8TF46 1054 aaKnown RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 HNRNPLLQ8WVV9 542 aaKnown RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 DACT3Q96B18 629 aaPredicted RBP5.17□□□□□ -1.58
USP54-217ENST00000498213 CLMNQ96JQ2 1002 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 MRGPRX3Q96LB0 322 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 MMP19Q99542 508 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 PTPN18Q99952 460 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 DBNDD1Q9H9R9 158 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 POLKQ9UBT6 870 aa5.17□□□□□ -1.58
USP54-217ENST00000498213 POLR2AP24928 1970 aaKnown RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 GJB6O95452 261 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 SGPL1O95470 568 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 NTRK1P04629 796 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 HOXC12P31275 282 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 IL6STP40189 918 aaPredicted RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 RPL11P62913 178 aaKnown RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 KCNAB2Q13303 367 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 VMACQ2NL98 169 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 CRY2Q49AN0 593 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 E4F1Q66K89 784 aaPredicted RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 OTUD7BQ6GQQ9 843 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 ANKS3Q6ZW76 656 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 ARMC9Q7Z3E5 817 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 TMEFF1Q8IYR6 380 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 CXorf38Q8TB03 319 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 DIO2Q92813 273 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 TSPAN17Q96FV3 270 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 RBM17Q96I25 401 aaKnown RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 CHAMP1Q96JM3 812 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 CCDC140Q96MF4 163 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 MTA3Q9BTC8 594 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 XYLT2Q9H1B5 865 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 EPN3Q9H201 632 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 VPS33BQ9H267 617 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 TTYH1Q9H313 450 aaPredicted RBP5.16□□□□□ -1.58
USP54-217ENST00000498213 SLC52A2Q9HAB3 445 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 ST7Q9NRC1 585 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 PMF1-BGLAPU3KQ54 211 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 BAHCC1Q9P281 2608 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 ABCC12Q96J65 1359 aa5.16□□□□□ -1.58
USP54-217ENST00000498213 CACNA1BQ00975 2339 aa5.15□□□□□ -1.58
USP54-217ENST00000498213 ZDBF2Q9HCK1 2354 aa5.15□□□□□ -1.58
USP54-217ENST00000498213 C22orf46C9J442 243 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 TBX1O43435 398 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 CPP00450 1065 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 ASGR2P07307 311 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 RPS12P25398 132 aaKnown RBP5.15□□□□□ -1.59
USP54-217ENST00000498213 PMLP29590 882 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 NF2P35240 595 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 GTF2A2P52657 109 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 FOXO4P98177 505 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 KIF22Q14807 665 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 TEX2Q8IWB9 1127 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 PPIL6Q8IXY8 311 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 SLC43A3Q8NBI5 491 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 RAET1EQ8TD07 263 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 ATXN2LQ8WWM7 1075 aaKnown RBP5.15□□□□□ -1.59
USP54-217ENST00000498213 DDX11Q96FC9 970 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 WNK4Q96J92 1243 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 DEFB118Q96PH6 123 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 CRAMP1Q96RY5 1269 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 RTFDC1Q9BY42 306 aaPredicted RBP5.15□□□□□ -1.59
USP54-217ENST00000498213 TRIM55Q9BYV6 548 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 BCAS3Q9H6U6 928 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 FBLN5Q9UBX5 448 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 COA3Q9Y2R0 106 aaPredicted RBP5.15□□□□□ -1.59
USP54-217ENST00000498213 ATP6V0A2Q9Y487 856 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms