RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TBC1D8BQ0IIM8 1120 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 RSPO4Q2I0M5 234 aaPredicted RBP18.69■□□□□ 0.58
VIM-208ENST00000497849 EFCAB12Q6NXP0 572 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 C15orf39Q6ZRI6 1047 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 RAB11FIP4Q86YS3 637 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 LRRC71Q8N4P6 559 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 KLHL5Q96PQ7 755 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 NRDE2Q9H7Z3 1164 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 TBC1D17Q9HA65 648 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 CA14Q9ULX7 337 aa18.69■□□□□ 0.58
VIM-208ENST00000497849 FAM86B1E9PN63 330 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 MAGEB2O15479 319 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 DCNP07585 359 aaKnown RBP18.68■□□□□ 0.58
VIM-208ENST00000497849 FAM86B2P0C5J1 330 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 DARSP14868 501 aaKnown RBP18.68■□□□□ 0.58
VIM-208ENST00000497849 SREBF1P36956 1147 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 GPC3P51654 580 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 COL9A3Q14050 684 aaPredicted RBP18.68■□□□□ 0.58
VIM-208ENST00000497849 SPECC1Q5M775 1068 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 WWC2Q6AWC2 1192 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 ZC3H14Q6PJT7 736 aaKnown RBP18.68■□□□□ 0.58
VIM-208ENST00000497849 TMTC3Q6ZXV5 915 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 NIPA1Q7RTP0 329 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 SLC44A3Q8N4M1 653 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 SUMF1Q8NBK3 374 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 MAP7D2Q96T17 732 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 RIC8AQ9NPQ8 531 aa18.68■□□□□ 0.58
VIM-208ENST00000497849 SH2B2O14492 632 aaPredicted RBP18.67■□□□□ 0.58
VIM-208ENST00000497849 B4GALT3O60512 393 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 FOSP01100 380 aaPredicted RBP18.67■□□□□ 0.58
VIM-208ENST00000497849 CNPP09543 421 aaKnown RBP18.67■□□□□ 0.58
VIM-208ENST00000497849 LPPQ93052 612 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 MTA3Q9BTC8 594 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 TBC1D13Q9NVG8 400 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 DACT1Q9NYF0 836 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 DNAJB4Q9UDY4 337 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 CEP131Q9UPN4 1083 aa18.67■□□□□ 0.58
VIM-208ENST00000497849 MAP1BP46821 2468 aaKnown RBP18.67■□□□□ 0.58
VIM-208ENST00000497849 IGLV3-22A0A075B6J6 115 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 POTEMA6NI47 508 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 SPDYE4A6NLX3 237 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 MEIS3P2A8K0S8 358 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 PRC1O43663 620 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 LILRB3O75022 631 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 CSDE1O75534 798 aaKnown RBP18.66■□□□□ 0.58
VIM-208ENST00000497849 IGHDP01880 384 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 NEFLP07196 543 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 SRFP11831 508 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 RFX1P22670 979 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 KLRC2P26717 231 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 PHKA2P46019 1235 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 PHLDB3Q6NSJ2 640 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 POTEGQ6S5H5 508 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 NFXL1Q6ZNB6 911 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 PLA2G4DQ86XP0 818 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 C1orf210Q8IVY1 113 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 ZNF710Q8N1W2 664 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 GPR152Q8TDT2 470 aa18.66■□□□□ 0.58
VIM-208ENST00000497849 CCDC69A6NI79 296 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 IPO5O00410 1097 aaKnown RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 CALM1P0DP23 149 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 CALM2P0DP24 149 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 CALM3P0DP25 149 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 GLULP15104 373 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 GSPT1P15170 499 aaKnown RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 TMOD1P28289 359 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 GBP2P32456 591 aaPredicted RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 ZNF76P36508 570 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 SLC11A1P49279 550 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 LONRF3Q496Y0 759 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 CASC1Q6TDU7 716 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 MAML2Q8IZL2 1156 aaPredicted RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 CMASQ8NFW8 434 aaPredicted RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 MYADMQ96S97 322 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 TRAIPQ9BWF2 469 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 EMILIN2Q9BXX0 1053 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 WDR6Q9NNW5 1121 aaKnown RBP18.65■□□□□ 0.58
VIM-208ENST00000497849 EPS15L1Q9UBC2 864 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 GABBR1Q9UBS5 961 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 SIT1Q9Y3P8 196 aa18.65■□□□□ 0.58
VIM-208ENST00000497849 CFAP47Q6ZTR5 3102 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 CARNS1A5YM72 827 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 SSBP05455 408 aaKnown RBP eCLIP18.64■□□□□ 0.57
VIM-208ENST00000497849 CLK2P49760 499 aaKnown RBP18.64■□□□□ 0.57
VIM-208ENST00000497849 NAPAP54920 295 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 NONOQ15233 471 aaKnown RBP eCLIP18.64■□□□□ 0.57
VIM-208ENST00000497849 ZNF746Q6NUN9 644 aaPredicted RBP18.64■□□□□ 0.57
VIM-208ENST00000497849 TEX2Q8IWB9 1127 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 TMTC2Q8N394 836 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 FANCBQ8NB91 859 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 CRYGNQ8WXF5 182 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 RSPH1Q8WYR4 309 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 RWDD1Q9H446 243 aaPredicted RBP18.64■□□□□ 0.57
VIM-208ENST00000497849 PCDHA10Q9Y5I2 948 aa18.64■□□□□ 0.57
VIM-208ENST00000497849 CACNA1GO43497 2377 aa18.63■□□□□ 0.57
VIM-208ENST00000497849 CHD8Q9HCK8 2581 aa18.63■□□□□ 0.57
VIM-208ENST00000497849 MIA3Q5JRA6 1907 aa18.63■□□□□ 0.57
VIM-208ENST00000497849 OFD1O75665 1012 aa18.63■□□□□ 0.57
VIM-208ENST00000497849 PSAPP07602 524 aa18.63■□□□□ 0.57
VIM-208ENST00000497849 LIFRP42702 1097 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms