RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 TRAPPC10P48553 1259 aa37.05■■■■□ 3.52
CBX4-203ENST00000494546 MCM2P49736 904 aa37.05■■■■□ 3.52
CBX4-203ENST00000494546 LMAN2LQ9H0V9 348 aa37.05■■■■□ 3.52
CBX4-203ENST00000494546 ANKEF1Q9NU02 776 aa37.05■■■■□ 3.52
CBX4-203ENST00000494546 DACT1Q9NYF0 836 aa37.05■■■■□ 3.52
CBX4-203ENST00000494546 A0A087WWV3 80 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 U2AF2P26368 475 aaKnown RBP eCLIP37.04■■■■□ 3.52
CBX4-203ENST00000494546 KCNQ1P51787 676 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 NBR1Q14596 966 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 CATSPER4Q7RTX7 472 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 PIGOQ8TEQ8 1089 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 P2RX5Q93086 422 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 IFT122Q9HBG6 1241 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 CHST12Q9NRB3 414 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 PLAGL2Q9UPG8 496 aa37.04■■■■□ 3.52
CBX4-203ENST00000494546 HOXA2O43364 376 aa37.03■■■■□ 3.52
CBX4-203ENST00000494546 LAMTOR4Q0VGL1 99 aa37.03■■■■□ 3.52
CBX4-203ENST00000494546 TCEAL5Q5H9L2 206 aa37.03■■■■□ 3.52
CBX4-203ENST00000494546 KLHL23Q8NBE8 558 aa37.03■■■■□ 3.52
CBX4-203ENST00000494546 NSUN3Q9H649 340 aaKnown RBP37.03■■■■□ 3.52
CBX4-203ENST00000494546 PIN4Q9Y237 131 aaKnown RBP37.03■■■■□ 3.52
CBX4-203ENST00000494546 A0A0U1RQF3 1178 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 FERMT3Q86UX7 667 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 ABI1Q8IZP0 508 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 TMEM117Q9H0C3 514 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 XPNPEP1Q9NQW7 623 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 TYW1Q9NV66 732 aaKnown RBP37.02■■■■□ 3.52
CBX4-203ENST00000494546 HCSTQ9UBK5 93 aa37.02■■■■□ 3.52
CBX4-203ENST00000494546 KIAA1671Q9BY89 1806 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 ITGB1P05556 798 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 GJB2P29033 226 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 NAALADL2Q58DX5 795 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 MCTP1Q6DN14 999 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 TWF2Q6IBS0 349 aaKnown RBP37.01■■■■□ 3.52
CBX4-203ENST00000494546 ADAMTS19Q8TE59 1207 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 AAASQ9NRG9 546 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 RNF19AQ9NV58 838 aa37.01■■■■□ 3.52
CBX4-203ENST00000494546 ARID2Q68CP9 1835 aa37.01■■■■□ 3.51
CBX4-203ENST00000494546 FNDC1Q4ZHG4 1894 aaPredicted RBP37.01■■■■□ 3.51
CBX4-203ENST00000494546 SPATA31C1P0DKV0 1188 aa37■■■■□ 3.51
CBX4-203ENST00000494546 RARRES1P49788 294 aa37■■■■□ 3.51
CBX4-203ENST00000494546 CATSPER3Q86XQ3 398 aa37■■■■□ 3.51
CBX4-203ENST00000494546 RNF149Q8NC42 400 aa37■■■■□ 3.51
CBX4-203ENST00000494546 ERMNQ8TAM6 284 aa37■■■■□ 3.51
CBX4-203ENST00000494546 CASD1Q96PB1 797 aa37■■■■□ 3.51
CBX4-203ENST00000494546 UBE2ZQ9H832 354 aaPredicted RBP37■■■■□ 3.51
CBX4-203ENST00000494546 TUFT1Q9NNX1 390 aa37■■■■□ 3.51
CBX4-203ENST00000494546 PCDHB12Q9Y5F1 795 aa37■■■■□ 3.51
CBX4-203ENST00000494546 VCANP13611 3396 aa36.99■■■■□ 3.51
CBX4-203ENST00000494546 ASAP2O43150 1006 aa36.99■■■■□ 3.51
CBX4-203ENST00000494546 MED24O75448 989 aa36.99■■■■□ 3.51
CBX4-203ENST00000494546 DGAT1O75907 488 aa36.99■■■■□ 3.51
CBX4-203ENST00000494546 TOB1P50616 345 aaPredicted RBP36.99■■■■□ 3.51
CBX4-203ENST00000494546 SRGAP1Q7Z6B7 1085 aa36.99■■■■□ 3.51
CBX4-203ENST00000494546 EOMESO95936 686 aa36.98■■■■□ 3.51
CBX4-203ENST00000494546 BMP1P13497 986 aa36.98■■■■□ 3.51
CBX4-203ENST00000494546 ZNF598Q86UK7 904 aaKnown RBP36.98■■■■□ 3.51
CBX4-203ENST00000494546 SPPL3Q8TCT6 385 aa36.98■■■■□ 3.51
CBX4-203ENST00000494546 POLR3CQ9BUI4 534 aaPredicted RBP36.98■■■■□ 3.51
CBX4-203ENST00000494546 XRCC6P12956 609 aaKnown RBP eCLIP36.97■■■■□ 3.515e-8■□□□□ 10.6
CBX4-203ENST00000494546 ATF7P17544 494 aaPredicted RBP36.97■■■■□ 3.51
CBX4-203ENST00000494546 PHKA2P46019 1235 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 CLLU1OSQ5K130 101 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 C4orf32Q8N8J7 132 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 MINDY3Q9H8M7 445 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 SMC3Q9UQE7 1217 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 PCDHB6Q9Y5E3 794 aa36.97■■■■□ 3.51
CBX4-203ENST00000494546 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP36.96■■■■□ 3.51
CBX4-203ENST00000494546 H3BQV1 296 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 USO1O60763 962 aaKnown RBP36.96■■■■□ 3.51
CBX4-203ENST00000494546 CAMK1Q14012 370 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 MXD4Q14582 209 aaPredicted RBP36.96■■■■□ 3.51
CBX4-203ENST00000494546 COLGALT1Q8NBJ5 622 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 HELQQ8TDG4 1101 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 CWH43Q9H720 699 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 AGPAT5Q9NUQ2 364 aa36.96■■■■□ 3.51
CBX4-203ENST00000494546 KCNA5P22460 613 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 DNAJB1P25685 340 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 POTEGQ6S5H5 508 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 LRRC55Q6ZSA7 311 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 EP400NLQ6ZTU2 488 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 LRRC43Q8N309 656 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 POF1BQ8WVV4 589 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 NACC1Q96RE7 527 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 UHRF1Q96T88 793 aaPredicted RBP36.95■■■■□ 3.51
CBX4-203ENST00000494546 TRAIPQ9BWF2 469 aa36.95■■■■□ 3.51
CBX4-203ENST00000494546 LAG3P18627 525 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 RPA1P27694 616 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 PTGDRQ13258 359 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 TFDP1Q14186 410 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 LONRF3Q496Y0 759 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 THNSL1Q8IYQ7 743 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 ASAP3Q8TDY4 903 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 FAM105AQ9NUU6 356 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 ZSCAN21Q9Y5A6 473 aaPredicted RBP36.94■■■■□ 3.5
CBX4-203ENST00000494546 CUL9Q8IWT3 2517 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 XIRP2A4UGR9 3374 aa36.94■■■■□ 3.5
CBX4-203ENST00000494546 SKIP12755 728 aa36.93■■■■□ 3.5
CBX4-203ENST00000494546 FXR2P51116 673 aaKnown RBP eCLIP36.93■■■■□ 3.53e-6■□□□□ 10.5
CBX4-203ENST00000494546 LPPQ93052 612 aa36.93■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms