RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 TNFRSF25Q93038 417 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 DYDC2Q96IM9 177 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 NLRP4Q96MN2 994 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 CYP26B1Q9NR63 512 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 TLR9Q9NR96 1032 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 RGL1Q9NZL6 768 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 CD207Q9UJ71 328 aa16.42■□□□□ 0.22
ATG4B-223ENST00000493618 HOXA2O43364 376 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 P4HBP07237 508 aaKnown RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 ATF7P17544 494 aaPredicted RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 LAG3P18627 525 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 RBM10P98175 930 aaKnown RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 CYP4A11Q02928 519 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 ZP2Q05996 745 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 ST3GAL1Q11201 340 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 CTTNQ14247 550 aaKnown RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 PLPP4Q5VZY2 271 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 LPPQ93052 612 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 PPP2R3CQ969Q6 453 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 TMEM143Q96AN5 459 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 CEP170P1Q96L14 293 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 NAP1L4Q99733 375 aaKnown RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 LXNQ9BS40 222 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 LRFN3Q9BTN0 628 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 TLE6Q9H808 572 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 BARX2Q9UMQ3 279 aaPredicted RBP16.41■□□□□ 0.22
ATG4B-223ENST00000493618 FAM50BQ9Y247 325 aa16.41■□□□□ 0.22
ATG4B-223ENST00000493618 BTBD18B2RXH4 712 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 PI4K2BG5E9Z4 385 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 WNT7AO00755 349 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 ZBTB39O15060 712 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 TBX3O15119 743 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 BAG4O95429 457 aaKnown RBP16.4■□□□□ 0.22
ATG4B-223ENST00000493618 GLP2RO95838 553 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 POLGP54098 1239 aaPredicted RBP16.4■□□□□ 0.22
ATG4B-223ENST00000493618 EPHA7Q15375 998 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 KCNT2Q6UVM3 1135 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 ZNF598Q86UK7 904 aaKnown RBP16.4■□□□□ 0.22
ATG4B-223ENST00000493618 LRRC43Q8N309 656 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 EFHBQ8N7U6 833 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 C11orf16Q9NQ32 467 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 CLEC1BQ9P126 229 aa16.4■□□□□ 0.22
ATG4B-223ENST00000493618 PIN4Q9Y237 131 aaKnown RBP16.4■□□□□ 0.22
ATG4B-223ENST00000493618 A0A0U1RQF3 1178 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 SFPQP23246 707 aaKnown RBP eCLIP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 YWHABP31946 246 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 GUCY1B3Q02153 619 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 UBE3AQ05086 875 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 SPIRE1Q08AE8 756 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 SMAD4Q13485 552 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 SMAD2Q15796 467 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 TMEM31Q5JXX7 168 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 TWF2Q6IBS0 349 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 CATSPER4Q7RTX7 472 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 ZNF410Q86VK4 478 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 ADHFE1Q8IWW8 467 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 DIS3L2Q8IYB7 885 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 MRPS27Q92552 414 aaKnown RBP16.39■□□□□ 0.21
ATG4B-223ENST00000493618 MSLNLQ96KJ4 702 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 ZNF558Q96NG5 402 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 ENTPD7Q9NQZ7 604 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 DACT1Q9NYF0 836 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 COL4A3BPQ9Y5P4 624 aa16.39■□□□□ 0.21
ATG4B-223ENST00000493618 NT5C1B-RDH14C9J2C7 533 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 FSCN2O14926 492 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 DKC1O60832 514 aaKnown RBP eCLIP16.38■□□□□ 0.21
ATG4B-223ENST00000493618 EOMESO95936 686 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 SRGAP2CP0DJJ0 459 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 PHKA2P46019 1235 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 CDC42EP1Q00587 391 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 TRIM29Q14134 588 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 CSPP1Q1MSJ5 1256 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 XKR9Q5GH70 373 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 TPH2Q8IWU9 490 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 SLFN12Q8IYM2 578 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 VN1R2Q8NFZ6 395 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 PRPF31Q8WWY3 499 aaKnown RBP16.38■□□□□ 0.21
ATG4B-223ENST00000493618 SLC7A3Q8WY07 619 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 TCF25Q9BQ70 676 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 JPH2Q9BR39 696 aaPredicted RBP16.38■□□□□ 0.21
ATG4B-223ENST00000493618 IFT122Q9HBG6 1241 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 CHST12Q9NRB3 414 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 PRKAG3Q9UGI9 489 aa16.38■□□□□ 0.21
ATG4B-223ENST00000493618 TDRD15B5MCY1 1934 aaKnown RBP16.37■□□□□ 0.21
ATG4B-223ENST00000493618 A0A087WWV3 80 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 MEIS3P2A8K0S8 358 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 ATP2B1P20020 1258 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 PLCB3Q01970 1234 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 EMC2Q15006 297 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 CALCRLQ16602 461 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 DUSP6Q16828 381 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 LLGL2Q6P1M3 1020 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 C4orf19Q8IY42 314 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 EIF2AK1Q9BQI3 630 aaKnown RBP16.37■□□□□ 0.21
ATG4B-223ENST00000493618 INO80BQ9C086 356 aaPredicted RBP16.37■□□□□ 0.21
ATG4B-223ENST00000493618 DHX33Q9H6R0 707 aaKnown RBP16.37■□□□□ 0.21
ATG4B-223ENST00000493618 ZSWIM4Q9H7M6 989 aa16.37■□□□□ 0.21
ATG4B-223ENST00000493618 MINDY3Q9H8M7 445 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms