RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CDC25AP30304 524 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 BMPR1AP36894 532 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 GPM6BQ13491 265 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 MAEAQ7L5Y9 396 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 ECHDC2Q86YB7 292 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 CMTR2Q8IYT2 770 aaKnown RBP20.2■□□□□ 0.82
COL9A3-214ENST00000490398 IGSF22Q8N9C0 903 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 LRWD1Q9UFC0 647 aa20.2■□□□□ 0.82
COL9A3-214ENST00000490398 TBKBP1A7MCY6 615 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 H3BNC9 293 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 GRM6O15303 877 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 ZSCAN20P17040 1043 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-214ENST00000490398 ARL2P36404 184 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 CDC42EP1Q00587 391 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 RILPL1Q5EBL4 403 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 ZNF598Q86UK7 904 aaKnown RBP20.19■□□□□ 0.82
COL9A3-214ENST00000490398 RNF149Q8NC42 400 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 RNF169Q8NCN4 708 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 SAMD11Q96NU1 681 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 ATP6V0A4Q9HBG4 840 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 POLD4Q9HCU8 107 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 TMEM161AQ9NX61 479 aa20.19■□□□□ 0.82
COL9A3-214ENST00000490398 DGAT1O75907 488 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 XRCC6P12956 609 aaKnown RBP eCLIP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 GLRA2P23416 452 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 CCT6AP40227 531 aaKnown RBP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 ATP2C1P98194 919 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 CAPSQ13938 189 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 LONRF3Q496Y0 759 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 CATSPER4Q7RTX7 472 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 NACC1Q96RE7 527 aa20.18■□□□□ 0.82
COL9A3-214ENST00000490398 MMTAG2Q9BU76 263 aaKnown RBP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 ELAC1Q9H777 363 aaKnown RBP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 PIN4Q9Y237 131 aaKnown RBP20.18■□□□□ 0.82
COL9A3-214ENST00000490398 VPS37CA5D8V6 355 aaPredicted RBP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 MEIS3P2A8K0S8 358 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 C5orf67F2Z3F1 127 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 CSPG5O95196 566 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 SFPQP23246 707 aaKnown RBP eCLIP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 HOXA11P31270 313 aaPredicted RBP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 PDIA5Q14554 519 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 CLLU1OSQ5K130 101 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 LRRC55Q6ZSA7 311 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 EXOC8Q8IYI6 725 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 ERMNQ8TAM6 284 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 SNX29Q8TEQ0 813 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 TCP11Q8WWU5 503 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 LPPQ93052 612 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 CCDC43Q96MW1 224 aaKnown RBP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 CASD1Q96PB1 797 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 POLR3FQ9H1D9 316 aaPredicted RBP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 DBR1Q9UK59 544 aaKnown RBP20.17■□□□□ 0.82
COL9A3-214ENST00000490398 KIAA1024Q9UPX6 916 aa20.17■□□□□ 0.82
COL9A3-214ENST00000490398 A0A0U1RQF3 1178 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 K7ELQ4 463 aaPredicted RBP20.16■□□□□ 0.82
COL9A3-214ENST00000490398 GAS2O43903 313 aaKnown RBP20.16■□□□□ 0.82
COL9A3-214ENST00000490398 DNAJB1P25685 340 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 CAMK1Q14012 370 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 UBXN11Q5T124 520 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 FAM173BQ6P4H8 233 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 DTHD1Q6ZMT9 781 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 KCNK18Q7Z418 384 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 BSNDQ8WZ55 320 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 CWH43Q9H720 699 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 ALG13Q9NP73 1137 aaKnown RBP20.16■□□□□ 0.82
COL9A3-214ENST00000490398 TYW1Q9NV66 732 aaKnown RBP20.16■□□□□ 0.82
COL9A3-214ENST00000490398 LMCD1Q9NZU5 365 aa20.16■□□□□ 0.82
COL9A3-214ENST00000490398 E9PMD0 336 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 ASAP2O43150 1006 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 SYT1P21579 422 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 PRPHP41219 470 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 PHKA2P46019 1235 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 PTENP60484 403 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 TFF2Q03403 129 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 SKIV2LQ15477 1246 aaKnown RBP20.15■□□□□ 0.82
COL9A3-214ENST00000490398 AMHR2Q16671 573 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 PADI6Q6TGC4 694 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 FAM43BQ6ZT52 329 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-214ENST00000490398 SRGAP1Q7Z6B7 1085 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 INO80BQ9C086 356 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-214ENST00000490398 CHST12Q9NRB3 414 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 AGPAT5Q9NUQ2 364 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 DDX19AQ9NUU7 478 aaKnown RBP20.15■□□□□ 0.82
COL9A3-214ENST00000490398 NLRC5Q86WI3 1866 aa20.15■□□□□ 0.82
COL9A3-214ENST00000490398 MUC3AQ02505 3323 aa20.14■□□□□ 0.82
COL9A3-214ENST00000490398 KIAA1671Q9BY89 1806 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 LAD1O00515 517 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 ITGB1P05556 798 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 RB1P06400 928 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 GRIN1Q05586 938 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 MBTD1Q05BQ5 628 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 RESTQ13127 1097 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 HAUS3Q68CZ6 603 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 TWF2Q6IBS0 349 aaKnown RBP20.14■□□□□ 0.81
COL9A3-214ENST00000490398 KLHL23Q8NBE8 558 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 HELQQ8TDG4 1101 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 MRPL38Q96DV4 380 aaKnown RBP20.14■□□□□ 0.81
COL9A3-214ENST00000490398 PNMA5Q96PV4 448 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 TMEM117Q9H0C3 514 aa20.14■□□□□ 0.81
COL9A3-214ENST00000490398 PLAGL2Q9UPG8 496 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms