RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 SMIM35A0A1B0GVV1 85 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 BECN2A8MW95 431 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 TGFB1I1O43294 461 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 HSPA8P11142 646 aaKnown RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 EEF1GP26641 437 aaKnown RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 EFNA5P52803 228 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 RAD51AP2Q09MP3 1159 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 PPFIA1Q13136 1202 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 MFSD10Q14728 455 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 PCBP1Q15365 356 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP11-209ENST00000488848 GRIK4Q16099 956 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 PKN2Q16513 984 aaKnown RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 FAM102BQ5T8I3 360 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 COL13A1Q5TAT6 717 aaPredicted RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 ISM2Q6H9L7 571 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 NFRKBQ6P4R8 1299 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 MTHFD1LQ6UB35 978 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 APTXQ7Z2E3 356 aaKnown RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 IRF2BP1Q8IU81 584 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 PSPC1Q8WXF1 523 aaKnown RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 BSNDQ8WZ55 320 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 HPS3Q969F9 1004 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 ARMC5Q96C12 935 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 PDLIM2Q96JY6 352 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 IFT74Q96LB3 600 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 POLR3FQ9H1D9 316 aaPredicted RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 HMX1Q9NP08 348 aaPredicted RBP11.79□□□□□ -0.52
USP11-209ENST00000488848 GPRC5CQ9NQ84 441 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 DMAC2Q9NW81 257 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 STYXL1Q9Y6J8 313 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 ADGRA3Q8IWK6 1321 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 EVPLQ92817 2033 aa11.79□□□□□ -0.52
USP11-209ENST00000488848 MYADML2A6NDP7 307 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 GOLGA6L19H0YKK7 550 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 MAPK13O15264 365 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 SLC16A3O15427 465 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 FGFR1OPO95684 399 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 C6orf222P0C671 652 aaPredicted RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 SMIM10L2AP0DMW4 78 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 SMIM10L2BP0DMW5 78 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 MYBP10242 640 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 MARK3P27448 753 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 PMS1P54277 932 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 TPM4P67936 248 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 FKBP3Q00688 224 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 CAPSQ13938 189 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 FAM187BQ17R55 369 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 KIAA0753Q2KHM9 967 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 HAUS6Q7Z4H7 955 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 CTU1Q7Z7A3 348 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 RNF180Q86T96 592 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 ZNF410Q86VK4 478 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 SLC43A3Q8NBI5 491 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 RNF214Q8ND24 703 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 ASAP3Q8TDY4 903 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 LMBR1Q8WVP7 490 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 SH2D3AQ9BRG2 576 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 MKNK1Q9BUB5 465 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 CCDC113Q9H0I3 377 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 GBP3Q9H0R5 595 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 C2orf40Q9H1Z8 148 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 LIMA1Q9UHB6 759 aaKnown RBP11.78□□□□□ -0.52
USP11-209ENST00000488848 CTNND2Q9UQB3 1225 aa11.78□□□□□ -0.52
USP11-209ENST00000488848 K7ENM7 598 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 KIAA0391O15091 583 aaKnown RBP11.77□□□□□ -0.53
USP11-209ENST00000488848 GCNT3O95395 438 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 GNA14O95837 355 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 GNAT1P11488 350 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 TMOD1P28289 359 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 NMT1P30419 496 aaKnown RBP11.77□□□□□ -0.53
USP11-209ENST00000488848 DNM2P50570 870 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 PEX3P56589 373 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 PTENP60484 403 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 LRRC41Q15345 812 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 GNASQ5JWF2 1037 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 ANKRD40Q6AI12 368 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 TAF2Q6P1X5 1199 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 FBXO46Q6PJ61 603 aaPredicted RBP11.77□□□□□ -0.53
USP11-209ENST00000488848 ZPBP2Q6X784 338 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 FAM43BQ6ZT52 329 aaPredicted RBP11.77□□□□□ -0.53
USP11-209ENST00000488848 TAS1R3Q7RTX0 852 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 PRPF31Q8WWY3 499 aaKnown RBP11.77□□□□□ -0.53
USP11-209ENST00000488848 MRFAP1L1Q96HT8 127 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 ACCSQ96QU6 501 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 TSG101Q99816 390 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.77□□□□□ -0.53
USP11-209ENST00000488848 KMT5AQ9NQR1 393 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 FANCLQ9NW38 375 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 GTF2IRD1Q9UHL9 959 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 OGDHLQ9ULD0 1010 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 TBX20Q9UMR3 447 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 EXOC7Q9UPT5 735 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 PHF24Q9UPV7 400 aa11.77□□□□□ -0.53
USP11-209ENST00000488848 SFI1A8K8P3 1242 aa11.76□□□□□ -0.53
USP11-209ENST00000488848 CALUO43852 315 aaPredicted RBP11.76□□□□□ -0.53
USP11-209ENST00000488848 CAND2O75155 1236 aa11.76□□□□□ -0.53
USP11-209ENST00000488848 ECM2O94769 699 aaPredicted RBP11.76□□□□□ -0.53
USP11-209ENST00000488848 PGK1P00558 417 aa11.76□□□□□ -0.53
USP11-209ENST00000488848 KLRC1P26715 233 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms