RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TGFB3P10600 412 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 ADAM9Q13443 819 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 CCDC40Q4G0X9 1142 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 ANO5Q75V66 913 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 MLXIPQ9HAP2 919 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-230ENST00000488543 CALUO43852 315 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-230ENST00000488543 NR2F2P24468 414 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 KRT9P35527 623 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 ADCYAP1R1P41586 468 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 ODR4Q5SWX8 454 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 FKBP15Q5T1M5 1219 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 KSR1Q8IVT5 923 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 FAM178BQ8IXR5 827 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 TINF2Q9BSI4 451 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 NAA15Q9BXJ9 866 aaKnown RBP13.33□□□□□ -0.28
HDAC6-230ENST00000488543 KATNBL1Q9H079 304 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 GJD2Q9UKL4 321 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 TFR2Q9UP52 801 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 PLXNA1Q9UIW2 1896 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 EFCAB8A8MWE9 144 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 TNPO2O14787 897 aaKnown RBP13.33□□□□□ -0.28
HDAC6-230ENST00000488543 CETN3O15182 167 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 TRPA1O75762 1119 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 NR3C1P04150 777 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 PSAPP07602 524 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 ATP4AP20648 1035 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 VEGFBP49765 207 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 NEDD9Q14511 834 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 NFIL3Q16649 462 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 FIGNQ5HY92 759 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 PCYT2Q99447 389 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 DNAJC7Q99615 494 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 ADGRG1Q9Y653 693 aa13.33□□□□□ -0.28
HDAC6-230ENST00000488543 ATG7O95352 703 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 SUPT20HL2P0C7V6 817 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 CYP2C19P33261 490 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 XKR9Q5GH70 373 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 CELF3Q5SZQ8 465 aaKnown RBP13.32□□□□□ -0.28
HDAC6-230ENST00000488543 METTL7BQ6UX53 244 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 MAMDC4Q6UXC1 1216 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 RETREG2Q8NC44 543 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 NUP58Q9BVL2 599 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 PARD6BQ9BYG5 372 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 IGSF9BQ9UPX0 1349 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 ADCY6O43306 1168 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 MAPTP10636 758 aaKnown RBP13.32□□□□□ -0.28
HDAC6-230ENST00000488543 PSMC4P43686 418 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 KCNMA1Q12791 1236 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 ZNF569Q5MCW4 686 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 TRIM50Q86XT4 487 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 CCDC155Q8N6L0 562 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 USP6NLQ92738 828 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 ATP6V0A1Q93050 837 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 TIPINQ9BVW5 301 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 AGPAT5Q9NUQ2 364 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 TRIM10Q9UDY6 481 aa13.32□□□□□ -0.28
HDAC6-230ENST00000488543 EPHB6O15197 1021 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 CLIC2O15247 247 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 AKAP3O75969 853 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 CCDC175P0C221 793 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 PLS3P13797 630 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 TCF7P36402 384 aaPredicted RBP13.31□□□□□ -0.28
HDAC6-230ENST00000488543 SOX10P56693 466 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 TTLL4Q14679 1199 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 MIS18BP1Q6P0N0 1132 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 CC2D1AQ6P1N0 951 aaPredicted RBP13.31□□□□□ -0.28
HDAC6-230ENST00000488543 FRMD5Q7Z6J6 570 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 ZNF467Q7Z7K2 595 aaPredicted RBP13.31□□□□□ -0.28
HDAC6-230ENST00000488543 SCFD2Q8WU76 684 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 SPATA33Q96N06 139 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 GPRC5CQ9NQ84 441 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 DIS3Q9Y2L1 958 aaKnown RBP13.31□□□□□ -0.28
HDAC6-230ENST00000488543 LUC7L2Q9Y383 392 aaKnown RBP13.31□□□□□ -0.28
HDAC6-230ENST00000488543 A0A1W2PQJ5 194 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 CASP4P49662 377 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 ACVR2BQ13705 512 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 WDR59Q6PJI9 974 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 TMTC1Q8IUR5 882 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 OR8K1Q8NGG5 319 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 GPR20Q99678 358 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 ZNF302Q9NR11 478 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 GABRQQ9UN88 632 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 PCDHB13Q9Y5F0 798 aa13.31□□□□□ -0.28
HDAC6-230ENST00000488543 SLC16A3O15427 465 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 PRKCEQ02156 737 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 STXBP4Q6ZWJ1 553 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 RSRC2Q7L4I2 434 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 IFNLR1Q8IU57 520 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 GPIHBP1Q8IV16 184 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 SEPT1Q8WYJ6 367 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 BORCS6Q96GS4 357 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 PCMTD1Q96MG8 357 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 CCDC43Q96MW1 224 aaKnown RBP13.3□□□□□ -0.28
HDAC6-230ENST00000488543 CHP1Q99653 195 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 SUGCTQ9HAC7 445 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 PDLIM7Q9NR12 457 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 DMAC2Q9NW81 257 aa13.3□□□□□ -0.28
HDAC6-230ENST00000488543 ARGLU1Q9NWB6 273 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms