RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	ASAP3	Q8TDY4	903 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	PRPF31	Q8WWY3	499 aa	Known RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	APBB2	Q92870	758 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	EPSTI1	Q96J88	318 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	AK8	Q96MA6	479 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	POLD4	Q9HCU8	107 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	ERVK-5	Q9HDB9	667 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	ST3GAL5	Q9UNP4	418 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	DNM3	Q9UQ16	869 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	SRPRB	Q9Y5M8	271 aa	Known RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	COL4A3BP	Q9Y5P4	624 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	GAS2	O43903	313 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	MGEA5	O60502	916 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	YEATS4	O95619	227 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	EYA4	O95677	639 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	SRGAP2C	P0DJJ0	459 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	DARS	P14868	501 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	MYOG	P15173	224 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	PLCG1	P19174	1290 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	EIF4B	P23588	611 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	ANP32A	P39687	249 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	TMEM119	Q4V9L6	283 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	HYI	Q5T013	277 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	RNF149	Q8NC42	400 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	LRRC15	Q8TF66	581 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	TCP11	Q8WWU5	503 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	LINC01599	Q8WXQ3	324 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	SYMPK	Q92797	1274 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	CALML4	Q96GE6	196 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	SLC9A7	Q96T83	725 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	PBX4	Q9BYU1	374 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	GCOM2	Q9BZD3	368 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	TMX1	Q9H3N1	280 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	SQOR	Q9Y6N5	450 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	SCN5A	Q14524	2016 aa		11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	TRIP12	Q14669	1992 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-222	ENST00000478095	GPR182	O15218	404 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	EFCAB14	O75071	495 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	PPP1R37	O75864	691 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	UPP2	O95045	317 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	AMH	P03971	560 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	CYP11B2	P19099	503 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	GLRA2	P23416	452 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	DDIT3	P35638	169 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	ARL2	P36404	184 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	SMAD3	P84022	425 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	RAD51AP2	Q09MP3	1159 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	CAPS	Q13938	189 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	DHX8	Q14562	1220 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	ZNF410	Q86VK4	478 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	HERC6	Q8IVU3	1022 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	MCPH1	Q8NEM0	835 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	RUSC1	Q9BVN2	902 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	NT5C3A	Q9H0P0	336 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	IFT122	Q9HBG6	1241 aa		11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	YBX2	Q9Y2T7	364 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-222	ENST00000478095	DENND3	A2RUS2	1198 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	LRRIQ4	A6NIV6	560 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	ENPP3	O14638	875 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	PPP6R2	O75170	966 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	PLA2G4B	P0C869	781 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	DNAJB2	P25686	324 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	TXLNA	P40222	546 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	ME1	P48163	572 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	CDC42EP1	Q00587	391 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	MXD4	Q14582	209 aa	Predicted RBP	11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	ZNF710	Q8N1W2	664 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	BSND	Q8WZ55	320 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	ADAM2	Q99965	735 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	ZBED2	Q9BTP6	218 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	PANK2	Q9BZ23	570 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	NKX2-4	Q9H2Z4	354 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	MINDY3	Q9H8M7	445 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	CFAP45	Q9UL16	551 aa		11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.39	□□□□□ -0.59
HDAC6-222	ENST00000478095		A0A087X0B3	334 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	INO80B-WBP1	J3KQ70	363 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	ASAP2	O43150	1006 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	TLL1	O43897	1013 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	HIP1R	O75146	1068 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	SFPQ	P23246	707 aa	Known RBP eCLIP	11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	PHKA2	P46019	1235 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	SLC12A3	P55017	1021 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	KRT85	P78386	507 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	TFDP1	Q14186	410 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	MCM6	Q14566	821 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	TPRN	Q4KMQ1	711 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	ODR4	Q5SWX8	454 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	ATL3	Q6DD88	541 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	RINT1	Q6NUQ1	792 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	C1orf186	Q6ZWK4	172 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095		Q7L0L9	218 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	CATSPER4	Q7RTX7	472 aa		11.38	□□□□□ -0.59
HDAC6-222	ENST00000478095	SYT2	Q8N9I0	419 aa	Predicted RBP	11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms