RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 SPATA31C1P0DKV0 1188 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 FGFR4P22455 802 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 SFPQP23246 707 aaKnown RBP eCLIP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 EMC2Q15006 297 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 ZNF174Q15697 407 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 PAN2Q504Q3 1202 aaKnown RBP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 TIGD5Q53EQ6 642 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 ZNF598Q86UK7 904 aaKnown RBP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 ECHDC2Q86YB7 292 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 C4orf32Q8N8J7 132 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 PRPF31Q8WWY3 499 aaKnown RBP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 PSPC1Q8WXF1 523 aaKnown RBP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 TUFT1Q9NNX1 390 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 XPNPEP1Q9NQW7 623 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 RNF19AQ9NV58 838 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 NOL7Q9UMY1 257 aaKnown RBP24.28■■□□□ 1.48
COL9A3-211ENST00000477612 PLAGL2Q9UPG8 496 aa24.28■■□□□ 1.48
COL9A3-211ENST00000477612 GRM6O15303 877 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 HOXA2O43364 376 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 CSDE1O75534 798 aaKnown RBP24.27■■□□□ 1.48
COL9A3-211ENST00000477612 BMP1P13497 986 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 TFF2Q03403 129 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 GNL2Q13823 731 aaKnown RBP24.27■■□□□ 1.48
COL9A3-211ENST00000477612 SRGAP1Q7Z6B7 1085 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 TMEM143Q96AN5 459 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 MTRQ99707 1265 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 TMEM117Q9H0C3 514 aa24.27■■□□□ 1.48
COL9A3-211ENST00000477612 TBKBP1A7MCY6 615 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 DGAT1O75907 488 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 TECP42680 631 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 RARRES1P49788 294 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 TOB1P50616 345 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-211ENST00000477612 LAMTOR4Q0VGL1 99 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 COL19A1Q14993 1142 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 FERMT3Q86UX7 667 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 CATSPER3Q86XQ3 398 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 NLRP4Q96MN2 994 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 CASD1Q96PB1 797 aa24.26■■□□□ 1.47
COL9A3-211ENST00000477612 POLR3CQ9BUI4 534 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-211ENST00000477612 NSUN3Q9H649 340 aaKnown RBP24.26■■□□□ 1.47
COL9A3-211ENST00000477612 FGFR1P11362 822 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 MUTP22033 750 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 POU5F1BQ06416 359 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 CAMK1Q14012 370 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 SPPL3Q8TCT6 385 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 CWH43Q9H720 699 aa24.25■■□□□ 1.47
COL9A3-211ENST00000477612 TTC28Q96AY4 2481 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 ZNF623O75123 536 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 MED24O75448 989 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 ITGB1P05556 798 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 ATF7P17544 494 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 RPA1P27694 616 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 FXR2P51116 673 aaKnown RBP eCLIP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 MXD4Q14582 209 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 IFNLR1Q8IU57 520 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 KLHL23Q8NBE8 558 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 ALG13Q9NP73 1137 aaKnown RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 AAASQ9NRG9 546 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 TYW1Q9NV66 732 aaKnown RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 DBR1Q9UK59 544 aaKnown RBP24.24■■□□□ 1.47
COL9A3-211ENST00000477612 NCOR1O75376 2440 aa24.24■■□□□ 1.47
COL9A3-211ENST00000477612 SKIP12755 728 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 IBSPP21815 317 aaPredicted RBP24.23■■□□□ 1.47
COL9A3-211ENST00000477612 GJB2P29033 226 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 ARL2P36404 184 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 PHKA2P46019 1235 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 PDIA5Q14554 519 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 TCEAL5Q5H9L2 206 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 CATSPER4Q7RTX7 472 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 PIGOQ8TEQ8 1089 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 RSPH1Q8WYR4 309 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 BACH2Q9BYV9 841 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 UBE2ZQ9H832 354 aaPredicted RBP24.23■■□□□ 1.47
COL9A3-211ENST00000477612 MINDY3Q9H8M7 445 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 AGPAT5Q9NUQ2 364 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 PCDHB12Q9Y5F1 795 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 MUC3AQ02505 3323 aa24.23■■□□□ 1.47
COL9A3-211ENST00000477612 SRGAP2CP0DJJ0 459 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 PCBP1Q15365 356 aaKnown RBP eCLIP24.22■■□□□ 1.47
COL9A3-211ENST00000477612 CSPP1Q1MSJ5 1256 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 LRRC55Q6ZSA7 311 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 RNF149Q8NC42 400 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 ERMNQ8TAM6 284 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 NACC1Q96RE7 527 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 BMP2KQ9NSY1 1161 aaPredicted RBP24.22■■□□□ 1.47
COL9A3-211ENST00000477612 PCDHB6Q9Y5E3 794 aa24.22■■□□□ 1.47
COL9A3-211ENST00000477612 LAD1O00515 517 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 DNAJB1P25685 340 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 KCNQ1P51787 676 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 PTENP60484 403 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 UBE3AQ05086 875 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 NBR1Q14596 966 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 CLLU1OSQ5K130 101 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 PABPC5Q96DU9 382 aaKnown RBP24.21■■□□□ 1.47
COL9A3-211ENST00000477612 NFKBIZQ9BYH8 718 aa24.21■■□□□ 1.47
COL9A3-211ENST00000477612 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.21■■□□□ 1.47
COL9A3-211ENST00000477612 PIN4Q9Y237 131 aaKnown RBP24.21■■□□□ 1.47
COL9A3-211ENST00000477612 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.21■■□□□ 1.47
COL9A3-211ENST00000477612 NCK2O43639 380 aa24.2■■□□□ 1.46
COL9A3-211ENST00000477612 LAG3P18627 525 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms