RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SLC30A10Q6XR72 485 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 CYB5R4Q7L1T6 521 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 EEPD1Q7L9B9 569 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ANKRD33Q7Z3H0 272 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 RALYLQ86SE5 291 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 TLK2Q86UE8 772 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 FBXO16Q8IX29 292 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ADGRF4Q8IZF3 695 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 C2CD4AQ8NCU7 369 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 RGS22Q8NE09 1264 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 DNERQ8NFT8 737 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 MAF1Q9H063 256 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 AP5M1Q9H0R1 490 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 CPVLQ9H3G5 476 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 PDLIM7Q9NR12 457 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 GNEQ9Y223 722 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 Q9Y3F1 56 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ELP1O95163 1332 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ABCB11O95342 1321 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 MROH7Q68CQ1 1323 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 MYH7BA7E2Y1 1941 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 A0A0U1RQG5 324 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 TRIM43BA6NCK2 446 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 FAM170BA6NMN3 283 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 DCDC2CA8MYV0 355 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 B4DLN1 442 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 CABYRO75952 493 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 MRPL12P52815 198 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 RPS6P62753 249 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 FSCN1Q16658 493 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 TAPT1Q6NXT6 567 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 PAOXQ6QHF9 649 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 XKR5Q6UX68 686 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 CENPQQ7L2Z9 268 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 MCF2L2Q86YR7 1114 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 C1orf127Q8N9H9 656 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 NCOA7Q8NI08 942 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 MAP4K1Q92918 833 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 BADQ92934 168 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 TRIM43Q96BQ3 446 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 TOX2Q96NM4 488 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 PDGFCQ9NRA1 345 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 STIM2Q9P246 746 aa7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 DDX49Q9Y6V7 483 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-213ENST00000476903 KLRF2D3W0D1 207 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 E7EWF7 191 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 ARVCFO00192 962 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 IFIT3O14879 490 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 KIAA0355O15063 1070 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 CTAGE5O15320 804 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 DYNC1LI2O43237 492 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 RAG1P15918 1043 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 EDNRBP24530 442 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 BEX3Q00994 111 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 FAAP100Q0VG06 881 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 WTAPQ15007 396 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 QRICH1Q2TAL8 776 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 DUSP28Q4G0W2 176 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM102Q8N9M5 508 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 AGBL5Q8NDL9 886 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 FLCNQ8NFG4 579 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 MKNK1Q9BUB5 465 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 SEZ6LQ9BYH1 1024 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 WDR11Q9BZH6 1224 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 JMJD4Q9H9V9 463 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 VAT1LQ9HCJ6 419 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 CYP4F12Q9HCS2 524 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM39AQ9NV64 488 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 CXXC1Q9P0U4 656 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 ZC3H7BQ9UGR2 993 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 MAD2L2Q9UI95 211 aa7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 MRPL11Q9Y3B7 192 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 RBM8AQ9Y5S9 174 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-213ENST00000476903 SCN10AQ9Y5Y9 1956 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 RBM47A0AV96 593 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 ZBTB5O15062 677 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 NKRFO15226 690 aaKnown RBP eCLIP7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 TLR3O15455 904 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 CPT1AP50416 773 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 CDK7P50613 346 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 TRAF1Q13077 416 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 GRM4Q14833 912 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 PPP2R5BQ15173 497 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 BMP2KLQ5H9B9 411 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 TMEM67Q5HYA8 995 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 CXCL17Q6UXB2 119 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 STOX1Q6ZVD7 989 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 CATIPQ7Z7H3 387 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 NSUN6Q8TEA1 469 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 SCFD2Q8WU76 684 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 NXPE3Q969Y0 559 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 TBC1D32Q96NH3 1257 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 AMNQ9BXJ7 453 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 CHRDQ9H2X0 955 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 TAF6LQ9Y6J9 622 aa7.88□□□□□ -1.15
CCDC88A-213ENST00000476903 COL6A3P12111 3177 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 TIMP1P01033 207 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 PTGS1P23219 599 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ITGB8P26012 769 aa7.87□□□□□ -1.15
CCDC88A-213ENST00000476903 ARL4DP49703 201 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms