RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 RNF19AQ9NV58 838 aa23.6■■□□□ 1.37
LIME1-204ENST00000476183 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.6■■□□□ 1.37
LIME1-204ENST00000476183 TTC28Q96AY4 2481 aa23.6■■□□□ 1.37
LIME1-204ENST00000476183 TBKBP1A7MCY6 615 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 GAS2O43903 313 aaKnown RBP23.59■■□□□ 1.37
LIME1-204ENST00000476183 RB1P06400 928 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 SRGAP2CP0DJJ0 459 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 FXR2P51116 673 aaKnown RBP eCLIP23.59■■□□□ 1.37
LIME1-204ENST00000476183 SKIV2LQ15477 1246 aaKnown RBP23.59■■□□□ 1.37
LIME1-204ENST00000476183 FERMT3Q86UX7 667 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 ECHDC2Q86YB7 292 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 TCP11Q8WWU5 503 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 MINDY3Q9H8M7 445 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 ATP6V0A4Q9HBG4 840 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.59■■□□□ 1.37
LIME1-204ENST00000476183 THEGQ9P2T0 379 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 RWDD3Q9Y3V2 267 aa23.59■■□□□ 1.37
LIME1-204ENST00000476183 H3BQV1 296 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 DGAT1O75907 488 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 XRCC6P12956 609 aaKnown RBP eCLIP23.58■■□□□ 1.37
LIME1-204ENST00000476183 SFPQP23246 707 aaKnown RBP eCLIP23.58■■□□□ 1.37
LIME1-204ENST00000476183 RPA1P27694 616 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 POTEGQ6S5H5 508 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 MRPL38Q96DV4 380 aaKnown RBP23.58■■□□□ 1.37
LIME1-204ENST00000476183 INO80BQ9C086 356 aaPredicted RBP23.58■■□□□ 1.37
LIME1-204ENST00000476183 HCSTQ9UBK5 93 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 ATG2AQ2TAZ0 1938 aa23.58■■□□□ 1.37
LIME1-204ENST00000476183 A0A0U1RQF3 1178 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 GRM6O15303 877 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 ATF7P17544 494 aaPredicted RBP23.57■■□□□ 1.36
LIME1-204ENST00000476183 IL17AQ16552 155 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 ECM1Q16610 540 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 LARP1BQ659C4 914 aaKnown RBP23.57■■□□□ 1.36
LIME1-204ENST00000476183 CATSPER4Q7RTX7 472 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 ZNF598Q86UK7 904 aaKnown RBP23.57■■□□□ 1.36
LIME1-204ENST00000476183 RNF149Q8NC42 400 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 ERMNQ8TAM6 284 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 ASAP3Q8TDY4 903 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 C11orf84Q9BUA3 381 aaPredicted RBP23.57■■□□□ 1.36
LIME1-204ENST00000476183 CHST12Q9NRB3 414 aa23.57■■□□□ 1.36
LIME1-204ENST00000476183 RNF216Q9NWF9 866 aaPredicted RBP23.57■■□□□ 1.36
LIME1-204ENST00000476183 ASAP2O43150 1006 aa23.56■■□□□ 1.36
LIME1-204ENST00000476183 ARL2P36404 184 aa23.56■■□□□ 1.36
LIME1-204ENST00000476183 CCDC43Q96MW1 224 aaKnown RBP23.56■■□□□ 1.36
LIME1-204ENST00000476183 NACC1Q96RE7 527 aa23.56■■□□□ 1.36
LIME1-204ENST00000476183 PLVAPQ9BX97 442 aa23.56■■□□□ 1.36
LIME1-204ENST00000476183 COL25A1Q9BXS0 654 aaPredicted RBP23.56■■□□□ 1.36
LIME1-204ENST00000476183 DBR1Q9UK59 544 aaKnown RBP23.56■■□□□ 1.36
LIME1-204ENST00000476183 PIN4Q9Y237 131 aaKnown RBP23.56■■□□□ 1.36
LIME1-204ENST00000476183 DLL1O00548 723 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 USO1O60763 962 aaKnown RBP23.55■■□□□ 1.36
LIME1-204ENST00000476183 TFF2Q03403 129 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 PTPROQ16827 1216 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 RILPL1Q5EBL4 403 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 SRGAP1Q7Z6B7 1085 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 IGSF22Q8N9C0 903 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 RNF169Q8NCN4 708 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 ATXN2LQ8WWM7 1075 aaKnown RBP23.55■■□□□ 1.36
LIME1-204ENST00000476183 CASD1Q96PB1 797 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 TMEM117Q9H0C3 514 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 ALG13Q9NP73 1137 aaKnown RBP23.55■■□□□ 1.36
LIME1-204ENST00000476183 TYW1Q9NV66 732 aaKnown RBP23.55■■□□□ 1.36
LIME1-204ENST00000476183 DACT1Q9NYF0 836 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 LRWD1Q9UFC0 647 aa23.55■■□□□ 1.36
LIME1-204ENST00000476183 GLRA2P23416 452 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 CCT6AP40227 531 aaKnown RBP23.54■■□□□ 1.36
LIME1-204ENST00000476183 PHKA2P46019 1235 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 PDIA5Q14554 519 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 MXD4Q14582 209 aaPredicted RBP23.54■■□□□ 1.36
LIME1-204ENST00000476183 CLLU1OSQ5K130 101 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 TWF2Q6IBS0 349 aaKnown RBP23.54■■□□□ 1.36
LIME1-204ENST00000476183 TRAIPQ9BWF2 469 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 CWH43Q9H720 699 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 GPRC5CQ9NQ84 441 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 AGPAT5Q9NUQ2 364 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 PLAGL2Q9UPG8 496 aa23.54■■□□□ 1.36
LIME1-204ENST00000476183 PP2D1A8MPX8 630 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 LAD1O00515 517 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 ITGB1P05556 798 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 HOXA11P31270 313 aaPredicted RBP23.53■■□□□ 1.36
LIME1-204ENST00000476183 PRPHP41219 470 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 PTENP60484 403 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 CAPSQ13938 189 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 CAMK1Q14012 370 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 TJAP1Q5JTD0 557 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 HAUS3Q68CZ6 603 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 LRRC55Q6ZSA7 311 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 MAEAQ7L5Y9 396 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 KLHL23Q8NBE8 558 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 P2RX5Q93086 422 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 ASB2Q96Q27 587 aa23.53■■□□□ 1.36
LIME1-204ENST00000476183 POLR3FQ9H1D9 316 aaPredicted RBP23.53■■□□□ 1.36
LIME1-204ENST00000476183 HOXA2O43364 376 aa23.52■■□□□ 1.36
LIME1-204ENST00000476183 EOMESO95936 686 aa23.52■■□□□ 1.36
LIME1-204ENST00000476183 MUTP22033 750 aa23.52■■□□□ 1.36
LIME1-204ENST00000476183 DNAJB1P25685 340 aa23.52■■□□□ 1.36
LIME1-204ENST00000476183 MRPS5P82675 430 aaKnown RBP23.52■■□□□ 1.36
LIME1-204ENST00000476183 ATP2C1P98194 919 aaPredicted RBP23.52■■□□□ 1.36
LIME1-204ENST00000476183 TIGD5Q53EQ6 642 aa23.52■■□□□ 1.36
LIME1-204ENST00000476183 SPPL3Q8TCT6 385 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms