RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CAPN12Q6ZSI9 719 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 TOGARAM2Q6ZUX3 1019 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 EFL1Q7Z2Z2 1120 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 SPATA21Q7Z572 469 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ASNSD1Q9NWL6 643 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 KANSL1LA0AUZ9 987 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ITIH4Q14624 930 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 MIS18BP1Q6P0N0 1132 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 C11orf57Q6ZUT1 292 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 KCTD17Q8N5Z5 321 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ST13P5Q8NFI4 369 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 FAM161BQ96MY7 647 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 SMYD3Q9H7B4 428 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 CXCR5P32302 372 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ZC3H12BQ5HYM0 836 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 NDEL1Q9GZM8 345 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ADA2Q9NZK5 511 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 AATKQ6ZMQ8 1374 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ST13P50502 369 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 TRAPPC3LQ5T215 181 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 NAA35Q5VZE5 725 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 METTL13Q8N6R0 699 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 NSUN7Q8NE18 718 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 DNAJC9Q8WXX5 260 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 PCDHA1Q9Y5I3 950 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ADGRL3Q9HAR2 1447 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 PMS1P54277 932 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 CORO7P57737 925 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ZBTB38Q8NAP3 1195 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ARHGEF1Q92888 912 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 CCT8L2Q96SF2 557 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 A0A0D9SFI3 127 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 DIAPH2O60879 1101 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 HOXC9P31274 260 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 VHLP40337 213 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 DSG1Q02413 1049 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 UBN1Q9NPG3 1134 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 H0Y3Z8 333 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 CTDSPL2Q05D32 466 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 TP53BP2Q13625 1128 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 OLFM1Q99784 485 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 FSD1LQ9BXM9 530 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 SAP30BPQ9UHR5 308 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 CNGA2Q16280 664 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 HIF1AQ16665 826 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 TRAF7Q6Q0C0 670 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 DDHD1Q8NEL9 900 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ALDH8A1Q9H2A2 487 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ZNF556Q9HAH1 456 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 SAYSD1Q9NPB0 183 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ZSCAN32Q9NX65 697 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 PALMO75781 387 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ATP5BP06576 529 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 OCM2P0CE71 109 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 OCMP0CE72 109 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 BRAFP15056 766 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 RSRC2Q7L4I2 434 aaKnown RBP14.13□□□□□ -0.15
COL6A3-209ENST00000472056 ACRBPQ8NEB7 543 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 MBD2Q9UBB5 411 aa14.13□□□□□ -0.15
COL6A3-209ENST00000472056 SLCO1A2P46721 670 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SPDYE1Q8NFV5 336 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TRIM54Q9BYV2 358 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 NCAPD2Q15021 1401 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 HLA-DPA1P20036 260 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 DDIT3P35638 169 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 CROCCP3Q8IVE0 287 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 OTUD7AQ8TE49 926 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TTC17Q96AE7 1141 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TMEM259Q4ZIN3 620 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 MTHFD1LQ6UB35 978 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SNX19Q92543 992 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TSPAN17Q96FV3 270 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 FAM47DPA6NHR8 397 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 LRRIQ4A6NIV6 560 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 ANGPT2O15123 496 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 ZMYND10O75800 440 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 ELMSAN1Q6PJG2 1045 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 CCNYQ8ND76 341 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 RIN3Q8TB24 985 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 EYA1Q99502 592 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 IP6K2Q9UHH9 426 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 FAM95CA0A1B0GW59 222 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SNTNA6NMZ2 147 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TOMM70O94826 608 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 PSMA2P25787 234 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 WLSQ5T9L3 541 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 DEPDC1Q5TB30 811 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 PLEKHM3Q6ZWE6 761 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 RDH13Q8NBN7 331 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 EME1Q96AY2 570 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 FAF2Q96CS3 445 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 PKD2L1Q9P0L9 805 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 MYO9BQ13459 2157 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 DYTNA2CJ06 578 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SPDYE2BA6NHP3 402 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 M0R3G1 203 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 ZNF263O14978 683 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 PSMD3O43242 534 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 LZTS3O60299 673 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 TAF5LO75529 589 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms