RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ADCY1Q08828 1119 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 ORC1Q13415 861 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 ZNF720Q7Z2F6 126 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 SPATA4Q8NEY3 305 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 SLC35C1Q96A29 364 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 HSD17B14Q9BPX1 270 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 AS3MTQ9HBK9 375 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 HSPBP1Q9NZL4 362 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 PPP1R9AQ9ULJ8 1098 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 VWA5AO00534 786 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 H2AFXP16104 143 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 LLGL2Q6P1M3 1020 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 CAPN12Q6ZSI9 719 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 PALB2Q86YC2 1186 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 BAP1Q92560 729 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 CEP63Q96MT8 703 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 CELF4Q9BZC1 486 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 METTL14Q9HCE5 456 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 WDR64B1ANS9 1081 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 PIK3R2O00459 728 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 PDXKO00764 312 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 CYP3A4P08684 503 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 CD19P15391 556 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 VAMP7P51809 220 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 GALCP54803 685 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 Q4G0T1 1027 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 NXF1Q9UBU9 619 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 ANKRD63C9JTQ0 380 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 H3BQF6 201 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 NOL4O94818 638 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 TMOD1P28289 359 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 HOXD13P35453 343 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 RARRES1P49788 294 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 TMEM62Q0P6H9 643 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 STRN3Q13033 797 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 PGM5Q15124 567 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 C1orf186Q6ZWK4 172 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 ACCSQ96QU6 501 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 FAM184BQ9ULE4 1060 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 GAP43P17677 238 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 MAP9Q49MG5 647 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 LEKR1Q6ZMV7 388 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 XXYLT1Q8NBI6 393 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 KLHL11Q9NVR0 708 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 SNX12Q9UMY4 172 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 A0A1B0GUL6 1792 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 CCNE2O96020 404 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 CCND2P30279 289 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 RPUSD2Q8IZ73 545 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 RBM46Q8TBY0 533 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 NSUN6Q8TEA1 469 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 POLR3FQ9H1D9 316 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 RANBP17Q9H2T7 1088 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 CD2APQ9Y5K6 639 aa14.9□□□□□ -0.02
CCDC88A-211ENST00000471947 LRRIQ3A6PVS8 624 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 TFAMQ00059 246 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 PRKCEQ02156 737 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 IFFO1Q0D2I5 559 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 TREML2Q5T2D2 321 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 SH2D3CQ8N5H7 860 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 PSMD1Q99460 953 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 TARS2Q9BW92 718 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 APOL6Q9BWW8 343 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 ADAM33Q9BZ11 813 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 AMACRQ9UHK6 382 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 PCDHA10Q9Y5I2 948 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 PTPRAP18433 802 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 SLC18A3Q16572 532 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 LY6KQ17RY6 165 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 GNPTABQ3T906 1256 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 KAZNQ674X7 775 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 OR2W6PQ8NHA6 318 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 COPS5Q92905 334 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 GMLQ99445 158 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 HEMGNQ9BXL5 484 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 A1CFQ9NQ94 594 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 CCDC151A5D8V7 595 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 CTNND1O60716 968 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 FGGP02679 453 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 FTLP02792 175 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 CARSP49589 748 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 PPP3CAQ08209 521 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 TMEM132BQ14DG7 1078 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 ARHGEF19Q8IW93 802 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 R3HDMLQ9H3Y0 253 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 AZI2Q9H6S1 392 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM204AQ9H8W3 233 aa14.89□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA6BA6NDN3 693 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 CNGA1P29973 690 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 OTUD6AQ7L8S5 288 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 AGO4Q9HCK5 861 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 JPH1Q9HDC5 661 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 COL22A1Q8NFW1 1626 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 K7ERI5 159 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 TBX3O15119 743 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 GJB6O95452 261 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 BCRP11274 1271 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 USP14P54578 494 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 PSMC5P62195 406 aa14.88□□□□□ -0.03
CCDC88A-211ENST00000471947 BFSP1Q12934 665 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms