RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 NDE1Q9NXR1 346 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 CCDC78A2IDD5 438 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 SOWAHDA6NJG2 315 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 PPP3CCP48454 512 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ANKRD40Q6AI12 368 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 TJP2Q9UDY2 1190 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ABCB11O95342 1321 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 KCNJ6P48051 423 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 VEPH1Q14D04 833 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 SNRNP48Q6IEG0 339 aaKnown RBP14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 LMBRD1Q9NUN5 540 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ASPSCR1Q9BZE9 553 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 RBM6P78332 1123 aaKnown RBP14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 MAN2A1Q16706 1144 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 AHI1Q8N157 1196 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ASZ1Q8WWH4 475 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 DYDC2Q96IM9 177 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 NOVA2Q9UNW9 492 aaKnown RBP14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 EPB42P16452 691 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 GPR1P46091 355 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 TRIM15Q9C019 465 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 PDE4DIPQ5VU43 2346 aa14.09□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 LUC7L3O95232 432 aaKnown RBP14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 COPS2P61201 443 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ATP6V0A4Q9HBG4 840 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 TLR7Q9NYK1 1049 aaKnown RBP14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 ADAM22Q9P0K1 906 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 PCDHGB4Q9UN71 923 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 CHL1O00533 1208 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 EIF4A3P38919 411 aaKnown RBP14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 DR1Q01658 176 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 PKP1Q13835 747 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 CCHCR1Q8TD31 782 aa14.08□□□□□ -0.15
NPHP3-ACAD11-201ENST00000471702 GRIN2AQ12879 1464 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AARSP49588 968 aaKnown RBP eCLIP14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CPVLQ9H3G5 476 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ARHGEF3Q9NR81 526 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PJA2O43164 708 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 NUGGCQ68CJ6 796 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 LCORLQ8N3X6 602 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DCUN1D1Q96GG9 259 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 NHEJ1Q9H9Q4 299 aaPredicted RBP14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PIM2Q9P1W9 311 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SPDYE5A6NIY4 337 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MRPL28Q13084 256 aaKnown RBP14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SPDYE7PQ495Y7 208 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MMP19Q99542 508 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 USP44Q9H0E7 712 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CYP4F11Q9HBI6 524 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RNF103-CHMP3A0A140T963 221 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 C2CD2LO14523 706 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 COPEO14579 308 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 BBOX1O75936 387 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MFSD14CQ5VZR4 134 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 C16orf87Q6PH81 154 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 BEST2Q8NFU1 509 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CENPKQ9BS16 269 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DCTN4Q9UJW0 460 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CARMIL3Q8ND23 1372 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ASNSP08243 561 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TMEM62Q0P6H9 643 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RALGDSQ12967 914 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DMC1Q14565 340 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZC3H18Q86VM9 953 aaKnown RBP14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 EXD1Q8NHP7 514 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SPATA33Q96N06 139 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 BCL2L14Q9BZR8 327 aa14.08□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 RASGRF2O14827 1237 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GCLMP48507 274 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SURF1Q15526 300 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PHKG1Q16816 387 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FASTKD1Q53R41 847 aaKnown RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 TRIM54Q9BYV2 358 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ZMYND12Q9H0C1 365 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ADAMTS1Q9UHI8 967 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AOX1Q06278 1338 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 ATP9BO43861 1147 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PCCAP05165 728 aaPredicted RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 HNRNPCP07910 306 aaKnown RBP eCLIP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CTSHP09668 335 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 SMARCA1P28370 1054 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CHRNA3P32297 505 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FAM47EQ6ZV65 393 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 HS6ST3Q8IZP7 471 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 LRRC37BQ96QE4 947 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AGRPO00253 132 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 PRRG1O14668 218 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 GUCA1AP43080 201 aaPredicted RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 CDK8P49336 464 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AGAP3Q96P47 875 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 DUOX2Q9NRD8 1548 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 UBE4BO95155 1302 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 HOXB7P09629 217 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MAP4P27816 1152 aaKnown RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 AKT1P31749 480 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 MEI1Q5TIA1 1274 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 NBPF15Q8N660 670 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 BTBD6Q96KE9 485 aa14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FAM217BQ9NTX9 383 aaPredicted RBP14.07□□□□□ -0.16
NPHP3-ACAD11-201ENST00000471702 FAM47DPA6NHR8 397 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms