RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 FBXL18Q96ME1 805 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 CCDC43Q96MW1 224 aaKnown RBP8.32□□□□□ -1.08
COL6A3-208ENST00000468792 SYT17Q9BSW7 474 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 NIFKQ9BYG3 293 aaKnown RBP8.32□□□□□ -1.08
COL6A3-208ENST00000468792 STK33Q9BYT3 514 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 LACRTQ9GZZ8 138 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 SPATC1LQ9H0A9 340 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 SIX2Q9NPC8 291 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 ARGLU1Q9NWB6 273 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-208ENST00000468792 RNF181Q9P0P0 153 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 RNF14Q9UBS8 474 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 NENFQ9UMX5 172 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 GUCA1BQ9UMX6 200 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 AGTPBP1Q9UPW5 1226 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 SAR1BQ9Y6B6 198 aa8.32□□□□□ -1.08
COL6A3-208ENST00000468792 A0A0U1RQJ8 604 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 RCCD1A6NED2 376 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 K7ENM7 598 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 DDX39AO00148 427 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 BACH1O14867 736 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 CLIC2O15247 247 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ZNF862O60290 1169 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 EXOC3O60645 756 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ABL1P00519 1130 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SUPT20HL2P0C7V6 817 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 KRT13P13646 458 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SLC9A1P19634 815 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 GARTP22102 1010 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ALDH5A1P51649 535 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 CHMP4BP1P59074 171 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ACTR2P61160 394 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 RBM10P98175 930 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 CKAP4Q07065 602 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 KLHL30Q0D2K2 578 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 DMP1Q13316 513 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 NEDD9Q14511 834 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 BMS1Q14692 1282 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ELF2Q15723 593 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ASIC2Q16515 512 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 UGCGQ16739 394 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 BRDTQ58F21 947 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 XKR9Q5GH70 373 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 LDLRAD1Q5T700 205 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 USP37Q86T82 979 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 VPS36Q86VN1 386 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 EXOC8Q8IYI6 725 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SYCP3Q8IZU3 236 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ANKRD35Q8N283 1001 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 MSL3Q8N5Y2 521 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 XXYLT1Q8NBI6 393 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 MSANTD4Q8NCY6 345 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SHCBP1Q8NEM2 672 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 MORC4Q8TE76 937 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 AFAP1L1Q8TED9 768 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 HNRNPLLQ8WVV9 542 aaKnown RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ATRIPQ8WXE1 791 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 ALS2CR12Q96Q35 445 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 CCDC94Q9BW85 323 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-208ENST00000468792 BCAS3Q9H6U6 928 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 KIAA1586Q9HCI6 787 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 GABBR1Q9UBS5 961 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 RAB21Q9UL25 225 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 TBX20Q9UMR3 447 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SLC45A1Q9Y2W3 748 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 COQ4Q9Y3A0 265 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 UTRNP46939 3433 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 WDR81Q562E7 1941 aa8.31□□□□□ -1.08
COL6A3-208ENST00000468792 SYNGAP1Q96PV0 1343 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 OTOFQ9HC10 1997 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 DNAJC25-GNG10A0A024R161 153 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 A0A0A6YYK5 440 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CTAGE15A4D2H0 777 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 IQCA1LA6NCM1 817 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CES2O00748 559 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 PIGRP01833 764 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 PLEKP08567 350 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CTAGE8P0CG41 777 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 TCP1P17987 556 aaKnown RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 OSBPP22059 807 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 RFC5P40937 340 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 STAT1P42224 750 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 NPTX2P47972 431 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 NPEPPSP55786 919 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 IRX3P78415 501 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CYP27A1Q02318 531 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 MOGSQ13724 837 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 BRD3Q15059 726 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 NAB2Q15742 525 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 IFI16Q16666 785 aaKnown RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 DCAF17Q5H9S7 520 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 TREML2Q5T2D2 321 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 C9orf131Q5VYM1 1079 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 ARMC9Q7Z3E5 817 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CTAGE6Q86UF2 777 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 PNMA8AQ86V59 439 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CTAGE4Q8IX94 777 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 LMO3Q8TAP4 145 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 TMC2Q8TDI7 906 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 RUBCNQ92622 972 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CDCA5Q96FF9 252 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms