RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 HAS1Q92839 578 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 GCOM2Q9BZD3 368 aaPredicted RBP27.49■■□□□ 1.99
PTCH1-210ENST00000468211 SUCLA2Q9P2R7 463 aaPredicted RBP27.49■■□□□ 1.99
PTCH1-210ENST00000468211 HOXA2O43364 376 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 FDPSP14324 419 aaKnown RBP27.48■■□□□ 1.99
PTCH1-210ENST00000468211 PLA2G5P39877 138 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 NPEPPSP55786 919 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 PLCB3Q01970 1234 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 DUSP6Q16828 381 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 PPP4R3AQ6IN85 833 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 RHPN2Q8IUC4 686 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 ABI1Q8IZP0 508 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 LRRC43Q8N309 656 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 HELQQ8TDG4 1101 aa27.48■■□□□ 1.99
PTCH1-210ENST00000468211 MRPS27Q92552 414 aaKnown RBP27.48■■□□□ 1.99
PTCH1-210ENST00000468211 CCNT1O60563 726 aaKnown RBP27.47■■□□□ 1.99
PTCH1-210ENST00000468211 LARGE1O95461 756 aa27.47■■□□□ 1.99
PTCH1-210ENST00000468211 PLPP4Q5VZY2 271 aa27.47■■□□□ 1.99
PTCH1-210ENST00000468211 NECAB1Q8N987 351 aa27.47■■□□□ 1.99
PTCH1-210ENST00000468211 FAM20AQ96MK3 541 aa27.47■■□□□ 1.99
PTCH1-210ENST00000468211 ORC3Q9UBD5 711 aaPredicted RBP27.47■■□□□ 1.99
PTCH1-210ENST00000468211 LZTS1Q9Y250 596 aa27.47■■□□□ 1.99
PTCH1-210ENST00000468211 PRR33A8MZF0 331 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 EOMESO95936 686 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 QARSP47897 775 aaKnown RBP27.46■■□□□ 1.99
PTCH1-210ENST00000468211 DNM2P50570 870 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 POTEDQ86YR6 584 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 ZNF558Q96NG5 402 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 CYP26B1Q9NR63 512 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 DACT1Q9NYF0 836 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 HCN4Q9Y3Q4 1203 aa27.46■■□□□ 1.99
PTCH1-210ENST00000468211 USP15Q9Y4E8 981 aaPredicted RBP27.46■■□□□ 1.99
PTCH1-210ENST00000468211 HIDE1A8MVS5 230 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 GCFC2P16383 781 aaKnown RBP27.45■■□□□ 1.98
PTCH1-210ENST00000468211 ANAPC15P60006 121 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 NR5A1Q13285 461 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 ZNF410Q86VK4 478 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 FAM122AQ96E09 287 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 NLRP4Q96MN2 994 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 POP1Q99575 1024 aaKnown RBP27.45■■□□□ 1.98
PTCH1-210ENST00000468211 TCF25Q9BQ70 676 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 CHST12Q9NRB3 414 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 MUTYHQ9UIF7 546 aa27.45■■□□□ 1.98
PTCH1-210ENST00000468211 XBP1P17861 261 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 PHKA2P46019 1235 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 CDC42EP1Q00587 391 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 KCNC3Q14003 757 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 ME3Q16798 604 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 LONRF3Q496Y0 759 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 PDE12Q6L8Q7 609 aaKnown RBP27.44■■□□□ 1.98
PTCH1-210ENST00000468211 RNF135Q8IUD6 432 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 LPPQ93052 612 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 IFT122Q9HBG6 1241 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 PPP4R2Q9NY27 417 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 RGL1Q9NZL6 768 aa27.44■■□□□ 1.98
PTCH1-210ENST00000468211 MEIS3P2A8K0S8 358 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 SFPQP23246 707 aaKnown RBP eCLIP27.43■■□□□ 1.98
PTCH1-210ENST00000468211 SPIRE1Q08AE8 756 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 SLC39A11Q8N1S5 342 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 TNFRSF25Q93038 417 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 CDCA3Q99618 268 aaPredicted RBP27.43■■□□□ 1.98
PTCH1-210ENST00000468211 ENTPD7Q9NQZ7 604 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 SPG21Q9NZD8 308 aa27.43■■□□□ 1.98
PTCH1-210ENST00000468211 PUF60Q9UHX1 559 aaKnown RBP27.43■■□□□ 1.98
PTCH1-210ENST00000468211 PIN4Q9Y237 131 aaKnown RBP27.43■■□□□ 1.98
PTCH1-210ENST00000468211 NT5C1B-RDH14C9J2C7 533 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 ZBTB39O15060 712 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 TBX3O15119 743 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 P4HBP07237 508 aaKnown RBP27.42■■□□□ 1.98
PTCH1-210ENST00000468211 TWF2Q6IBS0 349 aaKnown RBP27.42■■□□□ 1.98
PTCH1-210ENST00000468211 CEP170P1Q96L14 293 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 TRAIPQ9BWF2 469 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 BMP2KQ9NSY1 1161 aaPredicted RBP27.42■■□□□ 1.98
PTCH1-210ENST00000468211 TECTAO75443 2155 aa27.42■■□□□ 1.98
PTCH1-210ENST00000468211 PPM1AP35813 382 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 ANKRD1Q15327 319 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 EPHA7Q15375 998 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 NCAPH2Q6IBW4 605 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 TMEM143Q96AN5 459 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 DYDC2Q96IM9 177 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 LXNQ9BS40 222 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 DHX33Q9H6R0 707 aaKnown RBP27.41■■□□□ 1.98
PTCH1-210ENST00000468211 ARIH1Q9Y4X5 557 aaPredicted RBP27.41■■□□□ 1.98
PTCH1-210ENST00000468211 COL4A3BPQ9Y5P4 624 aa27.41■■□□□ 1.98
PTCH1-210ENST00000468211 LOC730098B7Z3J9 87 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 BCAR1P56945 870 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 KRT17Q04695 432 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 HERC4Q5GLZ8 1057 aaPredicted RBP27.4■■□□□ 1.98
PTCH1-210ENST00000468211 LLGL2Q6P1M3 1020 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 TMEM184AQ6ZMB5 413 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 CATSPER4Q7RTX7 472 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 TMC7Q7Z402 723 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 TMEM173Q86WV6 379 aaPredicted RBP27.4■■□□□ 1.98
PTCH1-210ENST00000468211 C4orf19Q8IY42 314 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 PRPF31Q8WWY3 499 aaKnown RBP27.4■■□□□ 1.98
PTCH1-210ENST00000468211 GTF3C6Q969F1 213 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 JPH2Q9BR39 696 aaPredicted RBP27.4■■□□□ 1.98
PTCH1-210ENST00000468211 INO80BQ9C086 356 aaPredicted RBP27.4■■□□□ 1.98
PTCH1-210ENST00000468211 MINDY3Q9H8M7 445 aa27.4■■□□□ 1.98
PTCH1-210ENST00000468211 NGRNQ9NPE2 291 aaKnown RBP27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms