RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ADAM7	Q9H2U9	754 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	SMOC2	Q9H3U7	446 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	VPS54	Q9P1Q0	977 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	PUF60	Q9UHX1	559 aa	Known RBP	12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	IRAK3	Q9Y616	596 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	CYP3A7-CYP3A51P	A0A087WV96	503 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	NT5C1B-RDH14	C9J2C7	533 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	CDC45	O75419	566 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	BRD1	O95696	1058 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	SRGAP2B	P0DMP2	458 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZSCAN20	P17040	1043 aa	Predicted RBP	12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	RPS6KB1	P23443	525 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	SP100	P23497	879 aa	Predicted RBP	12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	CYP3A7	P24462	503 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	TMOD1	P28289	359 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	SFN	P31947	248 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	PHKA2	P46019	1235 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	USP11	P51784	963 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	JAK3	P52333	1124 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	BCAR1	P56945	870 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815		Q4G0T1	1027 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	TMC7	Q7Z402	723 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	ETNPPL	Q8TBG4	499 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	RIPOR3	Q96MK2	946 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	JAKMIP1	Q96N16	626 aa	Known RBP	12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	NRBP2	Q9NSY0	501 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	SAMM50	Q9Y512	469 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	DMXL1	Q9Y485	3027 aa		12.59	□□□□□ -0.39
PTPN7-204	ENST00000462815	CHMP2A	O43633	222 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	GAS7	O60861	476 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	TDP2	O95551	362 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	PDIA3	P30101	505 aa	Known RBP	12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	KRT17	Q04695	432 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	ITIH3	Q06033	890 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	TBC1D8B	Q0IIM8	1120 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	LRCH2	Q5VUJ6	765 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	KANK3	Q6NY19	840 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	ABI1	Q8IZP0	508 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	RNF169	Q8NCN4	708 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	KREMEN2	Q8NCW0	462 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	RDM1	Q8NG50	284 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	BICD2	Q8TD16	824 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	TBCK	Q8TEA7	893 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	SLC22A17	Q8WUG5	538 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	LPP	Q93052	612 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	SH2D3A	Q9BRG2	576 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	SLC26A6	Q9BXS9	759 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	MRPL9	Q9BYD2	267 aa	Known RBP	12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	NRDE2	Q9H7Z3	1164 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	NCOA5	Q9HCD5	579 aa	Known RBP	12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	SH3GLB2	Q9NR46	395 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	CHST12	Q9NRB3	414 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	FAM86C1	Q9NVL1	165 aa		12.58	□□□□□ -0.4
PTPN7-204	ENST00000462815	MYO10	Q9HD67	2058 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815		A0A087WZ62	844 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	ZNF623	O75123	536 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	MAF	O75444	373 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	WEE2	P0C1S8	567 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	CTSA	P10619	480 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	EPCAM	P16422	314 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	TOB2	Q14106	344 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	TPRN	Q4KMQ1	711 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	KIAA1841	Q6NSI8	718 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	BLOC1S2	Q6QNY1	142 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	ANO5	Q75V66	913 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	C12orf76	Q8N812	135 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	CCDC148	Q8NFR7	591 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	NLRP7	Q8WX94	980 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	AUTS2	Q8WXX7	1259 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	RSPH1	Q8WYR4	309 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	IGSF21	Q96ID5	467 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	NECTIN4	Q96NY8	510 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	TEKT3	Q9BXF9	490 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	IFT122	Q9HBG6	1241 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	TBC1D13	Q9NVG8	400 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	DACT1	Q9NYF0	836 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	SORCS3	Q9UPU3	1222 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	NR2E1	Q9Y466	385 aa		12.57	□□□□□ -0.4
PTPN7-204	ENST00000462815	PROB1	E7EW31	1015 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	LILRB3	O75022	631 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	OFD1	O75665	1012 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	EFEMP2	O95967	443 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	GALT	P07902	379 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	AFF1	P51825	1210 aa	Known RBP	12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	NUBP1	P53384	320 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	POLG	P54098	1239 aa	Predicted RBP	12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	MTMR3	Q13615	1198 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	MTERF2	Q49AM1	385 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	XKR3	Q5GH77	459 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	MOXD1	Q6UVY6	613 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	DDX53	Q86TM3	631 aa	Known RBP	12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	ZNF410	Q86VK4	478 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	KSR1	Q8IVT5	923 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	UBALD2	Q8IYN6	164 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	ZDHHC14	Q8IZN3	488 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	VPS52	Q8N1B4	723 aa		12.56	□□□□□ -0.4
PTPN7-204	ENST00000462815	TMEM105	Q8N8V8	129 aa		12.56	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms