RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 PRPF31Q8WWY3 499 aaKnown RBP17.31■□□□□ 0.36
LIMS1-210ENST00000449684 P2RX5Q93086 422 aa17.31■□□□□ 0.36
LIMS1-210ENST00000449684 DHX33Q9H6R0 707 aaKnown RBP17.31■□□□□ 0.36
LIMS1-210ENST00000449684 CHST12Q9NRB3 414 aa17.31■□□□□ 0.36
LIMS1-210ENST00000449684 POTEMA6NI47 508 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 ZBTB39O15060 712 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 ASAP2O43150 1006 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 OR52Z1P0C646 297 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 TECP42680 631 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 TRAPPC10P48553 1259 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 ECHDC2Q86YB7 292 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 KLHL23Q8NBE8 558 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 ADAMTS19Q8TE59 1207 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 PPP2R3CQ969Q6 453 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 UHRF1Q96T88 793 aaPredicted RBP17.3■□□□□ 0.36
LIMS1-210ENST00000449684 HSD17B14Q9BPX1 270 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 TMEM117Q9H0C3 514 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 TMEM60Q9H2L4 133 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 UBE2ZQ9H832 354 aaPredicted RBP17.3■□□□□ 0.36
LIMS1-210ENST00000449684 ANKEF1Q9NU02 776 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 PLAGL2Q9UPG8 496 aa17.3■□□□□ 0.36
LIMS1-210ENST00000449684 PIN4Q9Y237 131 aaKnown RBP17.3■□□□□ 0.36
LIMS1-210ENST00000449684 H3BQV1 296 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 LYPLA2O95372 231 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 LINC00271P0C7V0 271 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 SKIP12755 728 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 LAMTOR4Q0VGL1 99 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 TCEAL5Q5H9L2 206 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 THNSL1Q8IYQ7 743 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 PIGOQ8TEQ8 1089 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 TMX3Q96JJ7 454 aa17.29■□□□□ 0.36
LIMS1-210ENST00000449684 TYW1Q9NV66 732 aaKnown RBP17.29■□□□□ 0.36
LIMS1-210ENST00000449684 A0A0U1RQF3 1178 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 NCK2O43639 380 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 DGAT1O75907 488 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 EOMESO95936 686 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 KCNA5P22460 613 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 KCNQ1P51787 676 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 NCBP1Q09161 790 aaKnown RBP17.28■□□□□ 0.36
LIMS1-210ENST00000449684 TFDP1Q14186 410 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 MXD4Q14582 209 aaPredicted RBP17.28■□□□□ 0.36
LIMS1-210ENST00000449684 CSPP1Q1MSJ5 1256 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 SRGAP1Q7Z6B7 1085 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 RNF149Q8NC42 400 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 MICAL1Q8TDZ2 1067 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 POF1BQ8WVV4 589 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 TBC1D32Q96NH3 1257 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 TUFT1Q9NNX1 390 aa17.28■□□□□ 0.36
LIMS1-210ENST00000449684 ERLIN2O94905 339 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 ITGB1P05556 798 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 XRCC6P12956 609 aaKnown RBP eCLIP17.27■□□□□ 0.36
LIMS1-210ENST00000449684 LAG3P18627 525 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 U2AF2P26368 475 aaKnown RBP eCLIP17.27■□□□□ 0.36
LIMS1-210ENST00000449684 PHKA2P46019 1235 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 FERMT3Q86UX7 667 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 LRRC43Q8N309 656 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 SPPL3Q8TCT6 385 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 NACC1Q96RE7 527 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 RAB34Q9BZG1 259 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 IGFLR1Q9H665 355 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 SMC3Q9UQE7 1217 aa17.27■□□□□ 0.36
LIMS1-210ENST00000449684 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-210ENST00000449684 REV3LO60673 3130 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 TNFRSF10AO00220 468 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 USO1O60763 962 aaKnown RBP17.26■□□□□ 0.35
LIMS1-210ENST00000449684 BMP1P13497 986 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 GJB2P29033 226 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 RARRES1P49788 294 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 RAB27AP51159 221 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 HAUS3Q68CZ6 603 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 CATSPER3Q86XQ3 398 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 COLGALT1Q8NBJ5 622 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 HELQQ8TDG4 1101 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 PGBD4Q96DM1 585 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 CASD1Q96PB1 797 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 POLR3CQ9BUI4 534 aaPredicted RBP17.26■□□□□ 0.35
LIMS1-210ENST00000449684 MRPL9Q9BYD2 267 aaKnown RBP17.26■□□□□ 0.35
LIMS1-210ENST00000449684 IFT122Q9HBG6 1241 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 CLDND1Q9NY35 253 aa17.26■□□□□ 0.35
LIMS1-210ENST00000449684 PUF60Q9UHX1 559 aaKnown RBP17.26■□□□□ 0.35
LIMS1-210ENST00000449684 FNDC1Q4ZHG4 1894 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-210ENST00000449684 A0A087WWV3 80 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-210ENST00000449684 FGF18O76093 207 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 KRT17Q04695 432 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 NBR1Q14596 966 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 LONRF3Q496Y0 759 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 MAEAQ7L5Y9 396 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 PABPC5Q96DU9 382 aaKnown RBP17.25■□□□□ 0.35
LIMS1-210ENST00000449684 ZNF558Q96NG5 402 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 FAM105AQ9NUU6 356 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 LRWD1Q9UFC0 647 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 STK24Q9Y6E0 443 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 VCANP13611 3396 aa17.25■□□□□ 0.35
LIMS1-210ENST00000449684 TCF20Q9UGU0 1960 aaKnown RBP17.24■□□□□ 0.35
LIMS1-210ENST00000449684 TTC28Q96AY4 2481 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 ARHGEF35A5YM69 484 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 INO80B-WBP1J3KQ70 363 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 MED24O75448 989 aa17.24■□□□□ 0.35
LIMS1-210ENST00000449684 CD2BP2O95400 341 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms