RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 P4HBP07237 508 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 DARSP14868 501 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 HOXB8P17481 243 aaPredicted RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 QARSP47897 775 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 NRIP1P48552 1158 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 RAB27AP51159 221 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 GPC3P51654 580 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 CLCN3P51790 818 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 NCBP1Q09161 790 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 CAMK1Q14012 370 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 GIT2Q14161 759 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 PCBP1Q15365 356 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS41-208ENST00000448833 TARBP2Q15633 366 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 FAM102BQ5T8I3 360 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 NEK8Q86SG6 692 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 ECHDC2Q86YB7 292 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 SLFN12Q8IYM2 578 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 LINC01465Q8N7H1 131 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 COLGALT1Q8NBJ5 622 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 TMEM87AQ8NBN3 555 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 TCP11Q8WWU5 503 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 MRPS27Q92552 414 aaKnown RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 PGBD4Q96DM1 585 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 MFSD14AQ96MC6 490 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 UIMC1Q96RL1 719 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 UNC45AQ9H3U1 944 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 CD320Q9NPF0 282 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 SPG21Q9NZD8 308 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 SEPT9Q9UHD8 586 aaPredicted RBP7.94□□□□□ -1.14
VPS41-208ENST00000448833 STK24Q9Y6E0 443 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 STK36Q9NRP7 1315 aa7.94□□□□□ -1.14
VPS41-208ENST00000448833 IGKV6-21A0A0C4DH24 114 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 ATF7P17544 494 aaPredicted RBP7.93□□□□□ -1.14
VPS41-208ENST00000448833 IBSPP21815 317 aaPredicted RBP7.93□□□□□ -1.14
VPS41-208ENST00000448833 DNAJB1P25685 340 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 RFC5P40937 340 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 STK3Q13188 491 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 PPP2R5CQ13362 524 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 TRIM29Q14134 588 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 LETM2Q2VYF4 491 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 MTERF2Q49AM1 385 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 HERC4Q5GLZ8 1057 aaPredicted RBP7.93□□□□□ -1.14
VPS41-208ENST00000448833 KCNT2Q6UVM3 1135 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 B3GNT9Q6UX72 402 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 TMEM184AQ6ZMB5 413 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 TMC7Q7Z402 723 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 LRRC71Q8N4P6 559 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 SMRP1Q8NCR6 262 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 CNNM3Q8NE01 707 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 ETNPPLQ8TBG4 499 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 MSLNLQ96KJ4 702 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 CASD1Q96PB1 797 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 PRRX2Q99811 253 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 PHF20Q9BVI0 1012 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 CWH43Q9H720 699 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 ENTPD7Q9NQZ7 604 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 KANSL3Q9P2N6 904 aa7.93□□□□□ -1.14
VPS41-208ENST00000448833 SUCLA2Q9P2R7 463 aaPredicted RBP7.93□□□□□ -1.14
VPS41-208ENST00000448833 ADAMTS3O15072 1205 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 CCNT1O60563 726 aaKnown RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 PFKFB2O60825 505 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 ZNF623O75123 536 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TBX10O75333 385 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TDP2O95551 362 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 FGFR1P11362 822 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 IRS1P35568 1242 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 GATMP50440 423 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 POLGP54098 1239 aaPredicted RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 DLX2Q07687 328 aaPredicted RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 MXD4Q14582 209 aaPredicted RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 SMC1AQ14683 1233 aaKnown RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 EPHA7Q15375 998 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 DUSP6Q16828 381 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 INF2Q27J81 1249 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TPRNQ4KMQ1 711 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TWF2Q6IBS0 349 aaKnown RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 CES5AQ6NT32 575 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 GLB1LQ6UWU2 654 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 SRGAP1Q7Z6B7 1085 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 RBM23Q86U06 439 aaKnown RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 RHPN2Q8IUC4 686 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 C4orf19Q8IY42 314 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 RNF169Q8NCN4 708 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 PSPC1Q8WXF1 523 aaKnown RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 CASP10Q92851 521 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TMEM169Q96HH4 297 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 NECTIN4Q96NY8 510 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 PPP1R16BQ96T49 567 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 TCF25Q9BQ70 676 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 PHF7Q9BWX1 381 aaPredicted RBP7.92□□□□□ -1.14
VPS41-208ENST00000448833 ZSWIM4Q9H7M6 989 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 UBN1Q9NPG3 1134 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 CYP26B1Q9NR63 512 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 CLEC1BQ9P126 229 aa7.92□□□□□ -1.14
VPS41-208ENST00000448833 A0A087WZ62 844 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 LOC730098B7Z3J9 87 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 FSCN2O14926 492 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 LINC01565O15544 149 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 EDIL3O43854 480 aa7.91□□□□□ -1.14
VPS41-208ENST00000448833 XRCC6P12956 609 aaKnown RBP eCLIP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms