RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 INTS4Q96HW7 963 aaKnown RBP27.54■■■□□ 2
RAPGEF1-206ENST00000438647 DBR1Q9UK59 544 aaKnown RBP27.54■■■□□ 2
RAPGEF1-206ENST00000438647 K7ELQ4 463 aaPredicted RBP27.53■■■□□ 2
RAPGEF1-206ENST00000438647 CSDE1O75534 798 aaKnown RBP27.53■■■□□ 2
RAPGEF1-206ENST00000438647 RB1P06400 928 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 FGFR4P22455 802 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 CTNNB1P35222 781 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 CCDC85BQ15834 202 aaPredicted RBP27.53■■■□□ 2
RAPGEF1-206ENST00000438647 DTHD1Q6ZMT9 781 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 BRAPQ7Z569 592 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 SRGAP1Q7Z6B7 1085 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 IGSF22Q8N9C0 903 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 IFT122Q9HBG6 1241 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 XPNPEP1Q9NQW7 623 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 UNC80Q8N2C7 3258 aa27.53■■■□□ 2
RAPGEF1-206ENST00000438647 HOXA2O43364 376 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 SRGAP2CP0DJJ0 459 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 CCT6AP40227 531 aaKnown RBP27.52■■■□□ 2
RAPGEF1-206ENST00000438647 TFDP1Q14186 410 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 POTEGQ6S5H5 508 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 CATSPER4Q7RTX7 472 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 RNF149Q8NC42 400 aa27.52■■■□□ 2
RAPGEF1-206ENST00000438647 PRRC2BQ5JSZ5 2229 aaKnown RBP27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 C5orf67F2Z3F1 127 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 H3BNC9 293 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 BMPR1AP36894 532 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 PHKA2P46019 1235 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 ATP2C1P98194 919 aaPredicted RBP27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 PTPROQ16827 1216 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 PAN2Q504Q3 1202 aaKnown RBP27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 MCPH1Q8NEM0 835 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 C11orf84Q9BUA3 381 aaPredicted RBP27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 PLVAPQ9BX97 442 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 COL4A4P53420 1690 aaPredicted RBP27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 RALGAPA2Q2PPJ7 1873 aa27.51■■□□□ 1.99
RAPGEF1-206ENST00000438647 A0A0U1RQF3 1178 aa27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 VPS37CA5D8V6 355 aaPredicted RBP27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 USO1O60763 962 aaKnown RBP27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 POU5F1BQ06416 359 aa27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 GPM6BQ13491 265 aa27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 KRT79Q5XKE5 535 aa27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 SNX29Q8TEQ0 813 aa27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 PIN4Q9Y237 131 aaKnown RBP27.5■■□□□ 1.99
RAPGEF1-206ENST00000438647 SKIP12755 728 aa27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 PCBP1Q15365 356 aaKnown RBP eCLIP27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 TWF2Q6IBS0 349 aaKnown RBP27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 ECHDC2Q86YB7 292 aa27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 TRAIPQ9BWF2 469 aa27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 MRPL42Q9Y6G3 142 aaKnown RBP27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 A0A0C4DFX4 3053 aa27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 NLRC5Q86WI3 1866 aa27.49■■□□□ 1.99
RAPGEF1-206ENST00000438647 A0A087WWV3 80 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 ARHGEF35A5YM69 484 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 TBKBP1A7MCY6 615 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 EOMESO95936 686 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 LINC00271P0C7V0 271 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 ARL2P36404 184 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 GATMP50440 423 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 FAM102BQ5T8I3 360 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 ARL6IP4Q66PJ3 421 aaKnown RBP27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 ABI1Q8IZP0 508 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 SNX21Q969T3 373 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 AGPAT5Q9NUQ2 364 aa27.48■■□□□ 1.99
RAPGEF1-206ENST00000438647 BMP15O95972 392 aa27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 SKIV2LQ15477 1246 aaKnown RBP27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 NAALADL2Q58DX5 795 aa27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 MRPL38Q96DV4 380 aaKnown RBP27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 TMEM117Q9H0C3 514 aa27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 POLR3FQ9H1D9 316 aaPredicted RBP27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 KIAA1024Q9UPX6 916 aa27.47■■□□□ 1.99
RAPGEF1-206ENST00000438647 ERLIN2O94905 339 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 FGFR1P11362 822 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 RAB27AP51159 221 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 PTENP60484 403 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 PADI6Q6TGC4 694 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 IFNLR1Q8IU57 520 aaPredicted RBP27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 RNF169Q8NCN4 708 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 RSPH1Q8WYR4 309 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 P2RX5Q93086 422 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 NFKBIZQ9BYH8 718 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 AAASQ9NRG9 546 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 THEGQ9P2T0 379 aa27.46■■□□□ 1.99
RAPGEF1-206ENST00000438647 NCBP1Q09161 790 aaKnown RBP27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 IL17AQ16552 155 aa27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 SPOUT1Q5T280 376 aaKnown RBP27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 HSCBQ8IWL3 235 aa27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 ASAP3Q8TDY4 903 aa27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 LMAN2LQ9H0V9 348 aa27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 MINDY3Q9H8M7 445 aa27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 DDX19AQ9NUU7 478 aaKnown RBP27.45■■□□□ 1.98
RAPGEF1-206ENST00000438647 CYP11B2P19099 503 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 SYT1P21579 422 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 GLRA2P23416 452 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 CAPSQ13938 189 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 ECM1Q16610 540 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 TIGD5Q53EQ6 642 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 MAEAQ7L5Y9 396 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 ZNF598Q86UK7 904 aaKnown RBP27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 BHMT2Q9H2M3 363 aa27.44■■□□□ 1.98
RAPGEF1-206ENST00000438647 FAM105AQ9NUU6 356 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms