RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 AFG1LQ8WV93 481 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 MMP19Q99542 508 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 SH2D3AQ9BRG2 576 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 IPO5O00410 1097 aaKnown RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 TTI1O43156 1089 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 TMPRSS15P98073 1019 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 TNFAIP2Q03169 654 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 C6orf118Q5T5N4 469 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 FAM47EQ6ZV65 393 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 CYTH2Q99418 400 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 NPHP3-ACAD11A0A0J9YXS1 232 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 MOCS2O96007 188 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 INTS2Q9H0H0 1204 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 FAM217BQ9NTX9 383 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 ASNSD1Q9NWL6 643 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 GNAT1P11488 350 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 DRAP1Q14919 205 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 ALS2CLQ60I27 953 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 NFRKBQ6P4R8 1299 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 BZW1Q7L1Q6 419 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 TSPYL2Q9H2G4 693 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 STK25O00506 426 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 TEX33O43247 280 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 P4HBP07237 508 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 EEF1B2P24534 225 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 GUCY1A2P33402 732 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 GIMAP8Q8ND71 665 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 FAM84BQ96KN1 310 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 KIF1BO60333 1816 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 MYO3BQ8WXR4 1341 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 CCDC195A0A1B0GUA6 201 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 ESYT3A0FGR9 886 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 CUL1Q13616 776 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 SZRD1Q7Z422 152 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 FMR1NBQ8N0W7 255 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 ZNF564Q8TBZ8 553 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 FAM20AQ96MK3 541 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 SARS2Q9NP81 518 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 COPEO14579 308 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 APOEP02649 317 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 GNA15P30679 374 aa18.35■□□□□ 0.53
PTPRF-209ENST00000438120 ZNF579Q8NAF0 562 aaKnown RBP18.35■□□□□ 0.53
PTPRF-209ENST00000438120 CHRNA5P30532 468 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 ARL4CP56559 192 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 TTLL4Q14679 1199 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 RNF219Q5W0B1 726 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 BEST2Q8NFU1 509 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 CCDC138Q96M89 665 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 VPS11Q9H270 941 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 ADCY2Q08462 1091 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 FRA10AC1Q70Z53 315 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 EDEM3Q9BZQ6 932 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 HDAC6Q9UBN7 1215 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 PIK3R2O00459 728 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 CHEK2O96017 543 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 TSPY1Q01534 308 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 TAF1BQ53T94 588 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 PRPF38AQ8NAV1 312 aaKnown RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 IFT43Q96FT9 208 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 RBM41Q96IZ5 413 aaKnown RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 VPS39Q96JC1 886 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 EIF2AK1Q9BQI3 630 aaKnown RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 SUCLA2Q9P2R7 463 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 STMN1P16949 149 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 CDR2Q01850 454 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 ATG16L1Q676U5 607 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 C1orf228Q6PIY5 440 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 FBXL13Q8NEE6 735 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 PSMC1P62191 440 aaKnown RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 DHX38Q92620 1227 aaKnown RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 PRDM5Q9NQX1 630 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-209ENST00000438120 TXLNGQ9NUQ3 528 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 CDC42BPGQ6DT37 1551 aa18.34■□□□□ 0.53
PTPRF-209ENST00000438120 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 RASA4BC9J798 803 aa18.33■□□□□ 0.53
PTPRF-209ENST00000438120 ANKRD65E5RJM6 399 aa18.33■□□□□ 0.53
PTPRF-209ENST00000438120 RASA4O43374 803 aa18.33■□□□□ 0.53
PTPRF-209ENST00000438120 FOXO4P98177 505 aa18.33■□□□□ 0.53
PTPRF-209ENST00000438120 HIBCHQ6NVY1 386 aaPredicted RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 HPS3Q969F9 1004 aa18.33■□□□□ 0.53
PTPRF-209ENST00000438120 CPSF1Q10570 1443 aaKnown RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 FTLP02792 175 aaPredicted RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 EIF3BP55884 814 aaKnown RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 RPAP3Q9H6T3 665 aaPredicted RBP18.33■□□□□ 0.53
PTPRF-209ENST00000438120 TRAIPQ9BWF2 469 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 PITPNM3Q9BZ71 974 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 KIAA1586Q9HCI6 787 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 CDHR2Q9BYE9 1310 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 ZBBXA8MT70 800 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 KRT37O76014 449 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 PDCLQ13371 301 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 TBC1D1Q86TI0 1168 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-209ENST00000438120 PROM2Q8N271 834 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 HMGCS2P54868 508 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 CACNB2Q08289 660 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-209ENST00000438120 MAP3K4Q9Y6R4 1608 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 SYNGAP1Q96PV0 1343 aa18.33■□□□□ 0.52
PTPRF-209ENST00000438120 PODXLO00592 558 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 LUC7L3O95232 432 aaKnown RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 MMEP08473 750 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms