RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ELAC1Q9H777 363 aaKnown RBP16.92■□□□□ 0.3
LIMS3-201ENST00000437679 CHST12Q9NRB3 414 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 TMEM161AQ9NX61 479 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 DACT1Q9NYF0 836 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 DBR1Q9UK59 544 aaKnown RBP16.92■□□□□ 0.3
LIMS3-201ENST00000437679 RALGAPA2Q2PPJ7 1873 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 TRANK1O15050 2925 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 EYSQ5T1H1 3165 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 K7ELQ4 463 aaPredicted RBP16.91■□□□□ 0.3
LIMS3-201ENST00000437679 MUTP22033 750 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 CCT6AP40227 531 aaKnown RBP16.91■□□□□ 0.3
LIMS3-201ENST00000437679 PRPHP41219 470 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 GPM6BQ13491 265 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 MXD4Q14582 209 aaPredicted RBP16.91■□□□□ 0.3
LIMS3-201ENST00000437679 PAN2Q504Q3 1202 aaKnown RBP16.91■□□□□ 0.3
LIMS3-201ENST00000437679 POTEGQ6S5H5 508 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 SRGAP1Q7Z6B7 1085 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 RNF149Q8NC42 400 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 CLP1Q92989 425 aaKnown RBP16.91■□□□□ 0.3
LIMS3-201ENST00000437679 IFT122Q9HBG6 1241 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 XPNPEP1Q9NQW7 623 aa16.91■□□□□ 0.3
LIMS3-201ENST00000437679 VPS37CA5D8V6 355 aaPredicted RBP16.9■□□□□ 0.3
LIMS3-201ENST00000437679 H3BNC9 293 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 HOXA2O43364 376 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 USO1O60763 962 aaKnown RBP16.9■□□□□ 0.3
LIMS3-201ENST00000437679 RB1P06400 928 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 BMPR1AP36894 532 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 PHKA2P46019 1235 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 GATMP50440 423 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 TFDP1Q14186 410 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 PTPROQ16827 1216 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 BRAPQ7Z569 592 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 IGSF22Q8N9C0 903 aa16.9■□□□□ 0.3
LIMS3-201ENST00000437679 INTS4Q96HW7 963 aaKnown RBP16.9■□□□□ 0.3
LIMS3-201ENST00000437679 PIN4Q9Y237 131 aaKnown RBP16.9■□□□□ 0.3
LIMS3-201ENST00000437679 MRPL42Q9Y6G3 142 aaKnown RBP16.9■□□□□ 0.3
LIMS3-201ENST00000437679 ARHGEF35A5YM69 484 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 TBKBP1A7MCY6 615 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 ARL2P36404 184 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 ATP2C1P98194 919 aaPredicted RBP16.89■□□□□ 0.29
LIMS3-201ENST00000437679 SKIV2LQ15477 1246 aaKnown RBP16.89■□□□□ 0.29
LIMS3-201ENST00000437679 FAM102BQ5T8I3 360 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 KRT79Q5XKE5 535 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 TWF2Q6IBS0 349 aaKnown RBP16.89■□□□□ 0.29
LIMS3-201ENST00000437679 ECHDC2Q86YB7 292 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 MCPH1Q8NEM0 835 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 SNX29Q8TEQ0 813 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 C11orf84Q9BUA3 381 aaPredicted RBP16.89■□□□□ 0.29
LIMS3-201ENST00000437679 PLVAPQ9BX97 442 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 PRUNE2Q8WUY3 3088 aa16.89■□□□□ 0.29
LIMS3-201ENST00000437679 FNDC1Q4ZHG4 1894 aaPredicted RBP16.88■□□□□ 0.29
LIMS3-201ENST00000437679 A0A0U1RQF3 1178 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 C5orf67F2Z3F1 127 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 FGFR1P11362 822 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 SKIP12755 728 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 SPOUT1Q5T280 376 aaKnown RBP16.88■□□□□ 0.29
LIMS3-201ENST00000437679 ABI1Q8IZP0 508 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 RNF169Q8NCN4 708 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 SNX21Q969T3 373 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 POLR3FQ9H1D9 316 aaPredicted RBP16.88■□□□□ 0.29
LIMS3-201ENST00000437679 KIAA1024Q9UPX6 916 aa16.88■□□□□ 0.29
LIMS3-201ENST00000437679 ERLIN2O94905 339 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 EOMESO95936 686 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 LINC00271P0C7V0 271 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 GLRA2P23416 452 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 PTENP60484 403 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 POU5F1BQ06416 359 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 PCBP1Q15365 356 aaKnown RBP eCLIP16.87■□□□□ 0.29
LIMS3-201ENST00000437679 IL17AQ16552 155 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 ECM1Q16610 540 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 NAALADL2Q58DX5 795 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 ARL6IP4Q66PJ3 421 aaKnown RBP16.87■□□□□ 0.29
LIMS3-201ENST00000437679 PADI6Q6TGC4 694 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 MAEAQ7L5Y9 396 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 ASAP3Q8TDY4 903 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 MRPL38Q96DV4 380 aaKnown RBP16.87■□□□□ 0.29
LIMS3-201ENST00000437679 TRAIPQ9BWF2 469 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 TMEM117Q9H0C3 514 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 MINDY3Q9H8M7 445 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 AAASQ9NRG9 546 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 FOXD4L1Q9NU39 408 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 AGPAT5Q9NUQ2 364 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 DDX19AQ9NUU7 478 aaKnown RBP16.87■□□□□ 0.29
LIMS3-201ENST00000437679 THEGQ9P2T0 379 aa16.87■□□□□ 0.29
LIMS3-201ENST00000437679 BMP15O95972 392 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 CYP11B2P19099 503 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 SYT1P21579 422 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 RAB27AP51159 221 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 NCBP1Q09161 790 aaKnown RBP16.86■□□□□ 0.29
LIMS3-201ENST00000437679 CAPSQ13938 189 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 HSCBQ8IWL3 235 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 P2RX5Q93086 422 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 LMAN2LQ9H0V9 348 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 BHMT2Q9H2M3 363 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 PRDM6Q9NQX0 595 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 FAM105AQ9NUU6 356 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 DNM3Q9UQ16 869 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 MYO7AQ13402 2215 aa16.86■□□□□ 0.29
LIMS3-201ENST00000437679 UNC80Q8N2C7 3258 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 KIAA1671Q9BY89 1806 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms