RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 RGS18Q9NS28 235 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 LRFN2Q9ULH4 789 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 DNM3Q9UQ16 869 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 LAMA3Q16787 3333 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 MGEA5O60502 916 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 SRGAP2CP0DJJ0 459 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 IBSPP21815 317 aaPredicted RBP12.72□□□□□ -0.37
COL28A1-203ENST00000435823 CDC25AP30304 524 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 PHKA2P46019 1235 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 SARSP49591 514 aaKnown RBP12.72□□□□□ -0.37
COL28A1-203ENST00000435823 BECN1Q14457 450 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 GRIN2CQ14957 1233 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 ECM1Q16610 540 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 FAM173BQ6P4H8 233 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 PADI6Q6TGC4 694 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 SLC24A5Q71RS6 500 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 SRGAP1Q7Z6B7 1085 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 RTN4RL1Q86UN2 441 aaPredicted RBP12.72□□□□□ -0.37
COL28A1-203ENST00000435823 KCTD17Q8N5Z5 321 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 RNF149Q8NC42 400 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 GAS2L1Q99501 681 aaPredicted RBP12.72□□□□□ -0.37
COL28A1-203ENST00000435823 NT5C3AQ9H0P0 336 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 POLR3FQ9H1D9 316 aaPredicted RBP12.72□□□□□ -0.37
COL28A1-203ENST00000435823 CLIC4Q9Y696 253 aa12.72□□□□□ -0.37
COL28A1-203ENST00000435823 LCHNA4D1U4 455 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 SLC26A4O43511 780 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CSDE1O75534 798 aaKnown RBP12.71□□□□□ -0.37
COL28A1-203ENST00000435823 EYA4O95677 639 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CYP11B2P19099 503 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 FGFR4P22455 802 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 ARL2P36404 184 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 LONP1P36776 959 aaKnown RBP12.71□□□□□ -0.37
COL28A1-203ENST00000435823 UBA7P41226 1012 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 TAP1Q03518 808 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CEBPZQ03701 1054 aaKnown RBP12.71□□□□□ -0.37
COL28A1-203ENST00000435823 FAM102BQ5T8I3 360 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 MAEAQ7L5Y9 396 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CATSPER4Q7RTX7 472 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CABP7Q86V35 215 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 ASAP3Q8TDY4 903 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 MYLIPQ8WY64 445 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CALML4Q96GE6 196 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 ZNF396Q96N95 335 aaPredicted RBP12.71□□□□□ -0.37
COL28A1-203ENST00000435823 MMTAG2Q9BU76 263 aaKnown RBP12.71□□□□□ -0.37
COL28A1-203ENST00000435823 BHMT2Q9H2M3 363 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 PRDM12Q9H4Q4 367 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 IFT122Q9HBG6 1241 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 CHST12Q9NRB3 414 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 DACT1Q9NYF0 836 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 PCDHB7Q9Y5E2 793 aa12.71□□□□□ -0.37
COL28A1-203ENST00000435823 TTC3P53804 2025 aa12.71□□□□□ -0.38
COL28A1-203ENST00000435823 ADGRA3Q8IWK6 1321 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 LINC01553A4QN01 128 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 C9IYK1 514 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 E9PMD0 336 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 ERLIN2O94905 339 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 ZSCAN22P10073 491 aaPredicted RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 FOSL2P15408 326 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 POU5F1BQ06416 359 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 MMRN1Q13201 1228 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 DSC3Q14574 896 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 PTPAQ15257 358 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 PCBP1Q15365 356 aaKnown RBP eCLIP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 HYIQ5T013 277 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 FOXD4L5Q5VV16 416 aaPredicted RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 FIBCD1Q8N539 461 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 RASSF8Q8NHQ8 419 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 FOXD4L4Q8WXT5 416 aaPredicted RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 ARNTL2Q8WYA1 636 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 TGS1Q96RS0 853 aaKnown RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 USP28Q96RU2 1077 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 ELAC1Q9H777 363 aaKnown RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 CERS4Q9HA82 394 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 PIN4Q9Y237 131 aaKnown RBP12.7□□□□□ -0.38
COL28A1-203ENST00000435823 STXBP5LQ9Y2K9 1186 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 COL4A6Q14031 1691 aa12.7□□□□□ -0.38
COL28A1-203ENST00000435823 INO80B-WBP1J3KQ70 363 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 HOXA2O43364 376 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 DGKIO75912 1065 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 ARHGEF15O94989 841 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 F13A1P00488 732 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 SKIP12755 728 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 GLRA2P23416 452 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 MARCKSP29966 332 aaPredicted RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 PTENP60484 403 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 ERVK-21P61565 698 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 NCBP1Q09161 790 aaKnown RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 GRB10Q13322 594 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 CAPSQ13938 189 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 BTG3Q14201 252 aaPredicted RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 PPP2R5AQ15172 486 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 STK38Q15208 465 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 TWF2Q6IBS0 349 aaKnown RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 ZBTB8OSQ8IWT0 167 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 CMTR2Q8IYT2 770 aaKnown RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 KIFAP3Q92845 792 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 IFT74Q96LB3 600 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 SAMD11Q96NU1 681 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 PNMA5Q96PV4 448 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 PLIN2Q99541 437 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms