RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CLDN3O15551 220 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 NDUFB10O96000 172 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 USP11P51784 963 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 NPEPPSP55786 919 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 TUBB4BP68371 445 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 ASPRV1Q53RT3 343 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 CACNA2D3Q8IZS8 1091 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 TMBIM4Q9HC24 238 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 KLC4Q9NSK0 619 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 EMSYQ7Z589 1322 aa9.36□□□□□ -0.91
USP40-203ENST00000427112 SSU72P8A0A1W2PR75 194 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 GOLGA8SH3BPF8 625 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 GOLGA8MH3BSY2 632 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 MEIS2O14770 477 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 RGS16O15492 202 aaPredicted RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 GAS7O60861 476 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 SGPL1O95470 568 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 GH1P01241 217 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 MYL1P05976 194 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 ECHS1P30084 290 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 SLC12A3P55017 1021 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 ACCSLQ4AC99 568 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 PLA2G4FQ68DD2 849 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 RPUSD2Q8IZ73 545 aaKnown RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 N4BP2L2Q92802 583 aaPredicted RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 ASTN1O14525 1302 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 MYH1P12882 1939 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 MYH4Q9Y623 1939 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 PI4K2BG5E9Z4 385 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 O00370 1275 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 SLC16A4O15374 487 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 SHOX2O60902 331 aaPredicted RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 SPAG7O75391 227 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 RAD17O75943 681 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 CHRNA5P30532 468 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 GBP2P32456 591 aaPredicted RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 PPP2R2AP63151 447 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 RRP1BQ14684 758 aaKnown RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 PHLDB3Q6NSJ2 640 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 HVCN1Q96D96 273 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 C9orf72Q96LT7 481 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 EFCC1Q9HA90 598 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 ALG6Q9Y672 507 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 CASZ1Q86V15 1759 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 A0A1W2PRG0 241 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 PPATQ06203 517 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 DDR1Q08345 913 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 CEP89Q96ST8 783 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 FAM167BQ9BTA0 163 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 NT5C3AQ9H0P0 336 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 C12orf65Q9H3J6 166 aaKnown RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 ABCF3Q9NUQ8 709 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 PPP1R1BQ9UD71 204 aaPredicted RBP9.35□□□□□ -0.91
USP40-203ENST00000427112 TCEAL9Q9UHQ7 104 aa9.35□□□□□ -0.91
USP40-203ENST00000427112 TGFB1I1O43294 461 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 TOM1O60784 492 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RPS6KA5O75582 802 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 HNRNPH3P31942 346 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 MYL7Q01449 175 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 ZNF394Q53GI3 561 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 FIGNQ5HY92 759 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 KIAA1755Q5JYT7 1200 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 DENND2CQ68D51 928 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RINT1Q6NUQ1 792 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 KDM7AQ6ZMT4 941 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RFX8Q6ZV50 586 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 DPH6Q7L8W6 267 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 HS2ST1Q7LGA3 356 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 NT5DC3Q86UY8 548 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 SLC47A2Q86VL8 602 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 CCDC26Q8TAB7 109 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 ISCUQ9H1K1 167 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 FGFR1OP2Q9NVK5 253 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PARP4Q9UKK3 1724 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 PPEF1O14829 653 aaPredicted RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 CALUO43852 315 aaPredicted RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 PEX10O60683 326 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 CYP3A4P08684 503 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 COMTP21964 271 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 CRKP46108 304 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PPP4CP60510 307 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PDIA5Q14554 519 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 EPHA7Q15375 998 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 KYNUQ16719 465 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 TMC3Q7Z5M5 1100 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RNF10Q8N5U6 811 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 ERMNQ8TAM6 284 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 LRRN4Q8WUT4 740 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 CAVIN3Q969G5 261 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 TEKT1Q969V4 418 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RNF25Q96BH1 459 aaPredicted RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 CSRNP1Q96S65 589 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 INTS2Q9H0H0 1204 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 INTS9Q9NV88 658 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 USP21Q9UK80 565 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 FRMD4BQ9Y2L6 1034 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PCDHGC5Q9Y5F6 944 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PCDHA2Q9Y5H9 948 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 UBR2Q8IWV8 1755 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms