RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ANO5Q75V66 913 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 EPM2AIP1Q7L775 607 aaPredicted RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TRMT1LQ7Z2T5 733 aaKnown RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TMC6Q7Z403 805 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TLK2Q86UE8 772 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TRIM50Q86XT4 487 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 SYCP3Q8IZU3 236 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 ANKK1Q8NFD2 765 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 NPLOC4Q8TAT6 608 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 SCFD1Q8WVM8 642 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TCP11Q8WWU5 503 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 KATNBL1Q9H079 304 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 HSD3B7Q9H2F3 369 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 KMT5AQ9NQR1 393 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 SAMSN1Q9NSI8 373 aaKnown RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 NRBP2Q9NSY0 501 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 TAB2Q9NYJ8 693 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 ERAP1Q9NZ08 941 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 CGNQ9P2M7 1197 aaKnown RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 IMPACTQ9P2X3 320 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 LIMA1Q9UHB6 759 aaKnown RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 KCNG1Q9UIX4 513 aa6.56□□□□□ -1.36
HMGB3-202ENST00000419110 MAFBQ9Y5Q3 323 aaPredicted RBP6.56□□□□□ -1.36
HMGB3-202ENST00000419110 ITIH6Q6UXX5 1313 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 A0A1B0GTH6 734 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 LRRIQ4A6NIV6 560 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CCDC169A6NNP5 214 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PDXKO00764 312 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 N4BP3O15049 544 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 ZBTB39O15060 712 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CETN3O15182 167 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 HBP1O60381 514 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PRPF6O94906 941 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SNAI1O95863 264 aaPredicted RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 NR3C1P04150 777 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 XRCC5P13010 732 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 AKR1A1P14550 325 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SFPQP23246 707 aaKnown RBP eCLIP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 MSNP26038 577 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 NMT1P30419 496 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PSMC4P43686 418 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CPT1AP50416 773 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CASP5P51878 434 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 COPB1P53618 953 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PMS1P54277 932 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 NCKAP1LP55160 1127 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 FKBP3Q00688 224 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 TNFAIP2Q03169 654 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PPP2R3AQ06190 1150 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 ARHGEF6Q15052 776 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 NFIL3Q16649 462 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 MAN2A1Q16706 1144 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 DGKDQ16760 1214 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 KNOP1Q1ED39 458 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CCDC144BQ3MJ40 725 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 HSDL1Q3SXM5 330 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 FKBP15Q5T1M5 1219 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 IQSEC1Q6DN90 963 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 TAPT1Q6NXT6 567 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 LRRC55Q6ZSA7 311 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 MAEAQ7L5Y9 396 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PLPPR4Q7Z2D5 763 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CREBRFQ8IUR6 639 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 MAP4K3Q8IVH8 894 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 VSTM4Q8IW00 320 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 ZBTB8OSQ8IWT0 167 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 DAW1Q8N136 415 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 RETREG2Q8NC44 543 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 GLIS3Q8NEA6 775 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 DEPTORQ8TB45 409 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 AFG1LQ8WV93 481 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SPIRE2Q8WWL2 714 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PSPC1Q8WXF1 523 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 USP6NLQ92738 828 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 COPS5Q92905 334 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 BICD1Q96G01 975 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 ACCSQ96QU6 501 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 KATNAL1Q9BW62 490 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SRRTQ9BXP5 876 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 CFHR5Q9BXR6 569 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 NIFKQ9BYG3 293 aaKnown RBP6.55□□□□□ -1.36
HMGB3-202ENST00000419110 FGFBP2Q9BYJ0 223 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 AP5M1Q9H0R1 490 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 GBP3Q9H0R5 595 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SEMA6BQ9H3T3 888 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 ST6GALNAC4Q9H4F1 302 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 TMEM206Q9H813 350 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PDGFCQ9NRA1 345 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 SAGE1Q9NXZ1 904 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 PCDHA2Q9Y5H9 948 aa6.55□□□□□ -1.36
HMGB3-202ENST00000419110 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.54□□□□□ -1.36
HMGB3-202ENST00000419110 DENND3A2RUS2 1198 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 HNRNPDLO14979 420 aaKnown RBP6.54□□□□□ -1.36
HMGB3-202ENST00000419110 SLC16A4O15374 487 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 AP5Z1O43299 807 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 HOXD8P13378 290 aaPredicted RBP6.54□□□□□ -1.36
HMGB3-202ENST00000419110 SMPD1P17405 629 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 HOXD10P28358 340 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 MAP2K2P36507 400 aa6.54□□□□□ -1.36
HMGB3-202ENST00000419110 NAMPTP43490 491 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms