RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SOCS4Q8WXH5 440 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 RPGRIP1Q96KN7 1286 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 AGPAT3Q9NRZ7 376 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 MORF4L1Q9UBU8 362 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 NDUFA10O95299 355 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 GNAT1P11488 350 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TAL1P17542 331 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 MAGEA1P43355 309 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 PHKA2P46019 1235 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 POLR2FP61218 127 aaKnown RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 GTF2BQ00403 316 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 ABHD15Q6UXT9 468 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 LRRC55Q6ZSA7 311 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TRMT1LQ7Z2T5 733 aaKnown RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 CCDC155Q8N6L0 562 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TRIM58Q8NG06 486 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 UBXN4Q92575 508 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 CLMNQ96JQ2 1002 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 NAPGQ99747 312 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 INO80BQ9C086 356 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 HSD3B7Q9H2F3 369 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 KCTD10Q9H3F6 313 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TMX1Q9H3N1 280 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 BTBD7Q9P203 1132 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TTC26A0AVF1 554 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 RRN3P2A6NIE6 340 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 VAMP7P51809 220 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 GPD1LQ8N335 351 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 MYRIPQ8NFW9 859 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 TMC2Q8TDI7 906 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 AFAP1L1Q8TED9 768 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 ERO1AQ96HE7 468 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 MRPL4Q9BYD3 311 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 GCNT4Q9P109 453 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 FBXL5Q9UKA1 691 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 TBX20Q9UMR3 447 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 DICER1Q9UPY3 1922 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 SFI1A8K8P3 1242 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 CLIC2O15247 247 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 SLC16A4O15374 487 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 GYPCP04921 128 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 RGS2P41220 211 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 MXI1P50539 228 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 ZCWPW2Q504Y3 356 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 CCDC181Q5TID7 509 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 IQSEC1Q6DN90 963 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 PDXDC1Q6P996 788 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 ATP8B4Q8TF62 1192 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 SECISBP2LQ93073 1101 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 ZFP91Q96JP5 570 aaPredicted RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 NOX5Q96PH1 765 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 NIFKQ9BYG3 293 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 IFIH1Q9BYX4 1025 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 EDIL3O43854 480 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 KPNA6O60684 536 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 PAFAH1B1P43034 410 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 NCKAP1LP55160 1127 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 MAPK6Q16659 721 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 CELF3Q5SZQ8 465 aaKnown RBP9.14□□□□□ -0.95
USP54-203ENST00000418501 HPS3Q969F9 1004 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 NT5C1BQ96P26 610 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 KATNAL1Q9BW62 490 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 ABHD16BQ9H3Z7 469 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 TMEM134Q9H6X4 195 aa9.14□□□□□ -0.95
USP54-203ENST00000418501 COBLO75128 1261 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 TNFAIP3P21580 790 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 EDNRBP24530 442 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 TCF7P36402 384 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 PMS1P54277 932 aaKnown RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 BFSP1Q12934 665 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 SYT10Q6XYQ8 523 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ZC3H3Q8IXZ2 948 aaKnown RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 SYCE1Q8N0S2 351 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ADPGKQ9BRR6 497 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 NHEJ1Q9H9Q4 299 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 COL1A2P08123 1366 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ERLIN1O75477 346 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 UBA1P22314 1058 aaKnown RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 HOXD10P28358 340 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 MAP4K3Q8IVH8 894 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 HSPBP1Q9NZL4 362 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 RBPJLQ9UBG7 517 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 PLAGL2Q9UPG8 496 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 PCDHA2Q9Y5H9 948 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 MAFBQ9Y5Q3 323 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 ADGRG1Q9Y653 693 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ZNF646O15015 1829 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 P4HA1P13674 534 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 DESP17661 470 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 VAV2P52735 878 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 CNTN2Q02246 1040 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ZNF569Q5MCW4 686 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ANKRD13CQ8N6S4 541 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 C1orf112Q9NSG2 853 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ZHX1Q9UKY1 873 aaPredicted RBP9.13□□□□□ -0.95
USP54-203ENST00000418501 PHIPQ8WWQ0 1821 aa9.13□□□□□ -0.95
USP54-203ENST00000418501 ZC3H11AO75152 810 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP54-203ENST00000418501 DGKZQ13574 1117 aa9.12□□□□□ -0.95
USP54-203ENST00000418501 WHAMMP3Q1A5X7 153 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms