RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 SH2D4BQ5SQS7 431 aa18.53■□□□□ 0.56
PHRF1-202ENST00000413872 TMEM270Q6UE05 265 aa18.53■□□□□ 0.56
PHRF1-202ENST00000413872 SMIM5Q71RC9 77 aa18.53■□□□□ 0.56
PHRF1-202ENST00000413872 EDEM3Q9BZQ6 932 aa18.53■□□□□ 0.56
PHRF1-202ENST00000413872 ZBTB12Q9Y330 459 aaPredicted RBP18.53■□□□□ 0.56
PHRF1-202ENST00000413872 UBE4BO95155 1302 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 SYNGAP1Q96PV0 1343 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 HGSO14964 777 aaPredicted RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 DUOXA2Q1HG44 320 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 LMNTD2Q8IXW0 634 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 UHMK1Q8TAS1 419 aaKnown RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 PHF20Q9BVI0 1012 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 AGO2Q9UKV8 859 aaKnown RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 PRR12Q9ULL5 1215 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 PDXKO00764 312 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 YWHABP31946 246 aaKnown RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 RIMS1Q86UR5 1692 aaKnown RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 STXBP3O00186 592 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 GH1P01241 217 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 CYP27A1Q02318 531 aa18.52■□□□□ 0.56
PHRF1-202ENST00000413872 RBAKQ9NYW8 714 aaPredicted RBP18.52■□□□□ 0.56
PHRF1-202ENST00000413872 ZNF189O75820 626 aaPredicted RBP18.52■□□□□ 0.55
PHRF1-202ENST00000413872 RFX5P48382 616 aaPredicted RBP18.52■□□□□ 0.55
PHRF1-202ENST00000413872 ZNF157P51786 506 aaPredicted RBP18.52■□□□□ 0.55
PHRF1-202ENST00000413872 PPARDQ03181 441 aa18.52■□□□□ 0.55
PHRF1-202ENST00000413872 PSMD6Q15008 389 aa18.52■□□□□ 0.55
PHRF1-202ENST00000413872 DHX38Q92620 1227 aaKnown RBP18.52■□□□□ 0.55
PHRF1-202ENST00000413872 MTIF3Q9H2K0 278 aaKnown RBP18.52■□□□□ 0.55
PHRF1-202ENST00000413872 HIP1RO75146 1068 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 FRMD5Q7Z6J6 570 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 WHAMMQ8TF30 809 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 NUDCD1Q96RS6 583 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 CAPS2Q9BXY5 557 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 PREX1Q8TCU6 1659 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 BUB1BO60566 1050 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-202ENST00000413872 MYBL1P10243 752 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 ANAPC7Q9UJX3 599 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 SPATA31D1Q6ZQQ2 1576 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 PODXLO00592 558 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 ZRANB2O95218 330 aaKnown RBP eCLIP18.51■□□□□ 0.553e-6■■■■□ 25.7
PHRF1-202ENST00000413872 GGPS1O95749 300 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 NR3C2P08235 984 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 KRT3P12035 628 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 RECQLP46063 649 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-202ENST00000413872 SCN4BQ8IWT1 228 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 RGL2O15211 777 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 INTS5Q6P9B9 1019 aaKnown RBP18.51■□□□□ 0.55
PHRF1-202ENST00000413872 SMAP1Q8IYB5 467 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-202ENST00000413872 UBE2Q2Q8WVN8 375 aa18.51■□□□□ 0.55
PHRF1-202ENST00000413872 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.51■□□□□ 0.55
PHRF1-202ENST00000413872 SDC4P31431 198 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 DR1Q01658 176 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 C1orf228Q6PIY5 440 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 MORC4Q8TE76 937 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 DEFB129Q9H1M3 183 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 TRIM49BA6NDI0 452 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 SART1O43290 800 aaKnown RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 RBBP5Q15291 538 aaKnown RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 ZNF394Q53GI3 561 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 CENPUQ71F23 418 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 KLC2Q9H0B6 622 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 PDHBP11177 359 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 IQCB1Q15051 598 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 INTS2Q9H0H0 1204 aaKnown RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 RASSF4Q9H2L5 321 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 INTS9Q9NV88 658 aaKnown RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 ASAP2O43150 1006 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 RNF219Q5W0B1 726 aaPredicted RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 RPUSD2Q8IZ73 545 aaKnown RBP18.5■□□□□ 0.55
PHRF1-202ENST00000413872 FBXL13Q8NEE6 735 aa18.5■□□□□ 0.55
PHRF1-202ENST00000413872 TRAPPC3O43617 180 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 SCP2P22307 547 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 EIF3BP55884 814 aaKnown RBP18.49■□□□□ 0.55
PHRF1-202ENST00000413872 CUL1Q13616 776 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 CDO1Q16878 200 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 PCK1P35558 622 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 RFC5P40937 340 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 TGFB2P61812 414 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 CYP4F22Q6NT55 531 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 ATP6V1E2Q96A05 226 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 TNIP3Q96KP6 325 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 EFCC1Q9HA90 598 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 UBN1Q9NPG3 1134 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 ABHD10Q9NUJ1 306 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 SREBF2Q12772 1141 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 RWDD4Q6NW29 188 aaKnown RBP18.49■□□□□ 0.55
PHRF1-202ENST00000413872 RIT2Q99578 217 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 GOLPH3LQ9H4A5 285 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 USH1CQ9Y6N9 552 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 ANO9A1A5B4 782 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 SLC16A3O15427 465 aaKnown RBP18.49■□□□□ 0.55
PHRF1-202ENST00000413872 PRKCBP05771 671 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 RNF149Q8NC42 400 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 ACAP3Q96P50 834 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 ZWILCHQ9H900 591 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 MAP3K20Q9NYL2 800 aaKnown RBP18.49■□□□□ 0.55
PHRF1-202ENST00000413872 FAM8A1Q9UBU6 413 aa18.49■□□□□ 0.55
PHRF1-202ENST00000413872 A0A1W2PQC6 194 aa18.48■□□□□ 0.55
PHRF1-202ENST00000413872 VPS39Q96JC1 886 aa18.48■□□□□ 0.55
PHRF1-202ENST00000413872 RABEP2Q9H5N1 569 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms