RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NRBP1Q9UHY1 535 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 FEM1BQ9UK73 627 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 FGGP02679 453 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PRELPP51888 382 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 E2F5Q15329 346 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 KBTBD12Q3ZCT8 623 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 KCTD16Q68DU8 428 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C11orf57Q6ZUT1 292 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 BEST2Q8NFU1 509 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 TTC17Q96AE7 1141 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 FAM149B1Q96BN6 582 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C8orf37Q96NL8 207 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ANO3Q9BYT9 981 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PPARGC1AQ9UBK2 798 aaKnown RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 DBNLQ9UJU6 430 aaKnown RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 MED14O60244 1454 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 A0A1W2PQJ5 194 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PLCG1P19174 1290 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 NCF2P19878 526 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 SOX5P35711 763 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 EPHB1P54762 984 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 KCNQ4P56696 695 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 RAD51Q06609 339 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C2orf54Q08AI8 447 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 FLOT2Q14254 428 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 TKFCQ3LXA3 575 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF677Q86XU0 584 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CCNJLQ8IV13 435 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 SULF1Q8IWU6 871 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 SAMD3Q8N6K7 520 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 GTF3C2Q8WUA4 911 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 STAMQ92783 540 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 BTBD6Q96KE9 485 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CLIC6Q96NY7 704 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CYTH2Q99418 400 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 MAP3K14Q99558 947 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 LGR6Q9HBX8 967 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 TUFT1Q9NNX1 390 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 GINM1Q9NU53 330 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PALD1Q9ULE6 856 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PDXKO00764 312 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CDH16O75309 829 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PEX19P40855 299 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 RAP1GDS1P52306 607 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C1orf146Q5VVC0 180 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ASAP3Q8TDY4 903 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 RAD54LQ92698 747 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF560Q96MR9 790 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 SAYSD1Q9NPB0 183 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PDP2Q9P2J9 529 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 LIMA1Q9UHB6 759 aaKnown RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 VPS9D1Q9Y2B5 631 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 MTO1Q9Y2Z2 717 aaKnown RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 GJA3Q9Y6H8 435 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 EFCAB6Q5THR3 1501 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 K7ERI5 159 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 P3H1Q32P28 736 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FBXO38Q6PIJ6 1188 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 NLRP10Q86W26 655 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RCOR2Q8IZ40 523 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 IL17REQ8NFR9 667 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ATL2Q8NHH9 583 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CALML6Q8TD86 181 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HNRNPLLQ8WVV9 542 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 POP5Q969H6 163 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FAR2Q96K12 515 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RANBP17Q9H2T7 1088 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TBC1D23Q9NUY8 699 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 BSDC1Q9NW68 430 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CNOT8Q9UFF9 292 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 CDV3Q9UKY7 258 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 HPCAL4Q9UM19 191 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PTPN22Q9Y2R2 807 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 NCKAP5LQ9HCH0 1330 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 LMTK3Q96Q04 1460 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 UGGT1Q9NYU2 1555 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MEFVO15553 781 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 KDM1AO60341 852 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 E2F6O75461 281 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ASNSP08243 561 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ACADSP16219 412 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 ADRA2BP18089 450 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 YWHAHQ04917 246 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FAM133BQ5BKY9 247 aaKnown RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TMTC4Q5T4D3 741 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 TTC19Q6DKK2 380 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 FRA10AC1Q70Z53 315 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 SGMS1Q86VZ5 419 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 RTKN2Q8IZC4 609 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PCYOX1LQ8NBM8 494 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 SPDYE1Q8NFV5 336 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MKNK1Q9BUB5 465 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 VPS33BQ9H267 617 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 DNAJC12Q9UKB3 198 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 LRFN2Q9ULH4 789 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MRFAP1Q9Y605 127 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 COBLO75128 1261 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 PYGMP11217 842 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 MUTP22033 750 aa6.48□□□□□ -1.37
SCN1A-203ENST00000409050 SDC4P31431 198 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 1103.3 ms