RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ALYREFQ86V81 257 aaKnown RBP11.62□□□□□ -0.55
NEDD8-202ENST00000396828 THNSL1Q8IYQ7 743 aa11.62□□□□□ -0.55
NEDD8-202ENST00000396828 TBCKQ8TEA7 893 aa11.62□□□□□ -0.55
NEDD8-202ENST00000396828 CCDC12Q8WUD4 166 aaPredicted RBP11.62□□□□□ -0.55
NEDD8-202ENST00000396828 FBXL18Q96ME1 805 aa11.62□□□□□ -0.55
NEDD8-202ENST00000396828 CEP89Q96ST8 783 aa11.62□□□□□ -0.55
NEDD8-202ENST00000396828 APOL5Q9BWW9 433 aa11.62□□□□□ -0.55
NEDD8-202ENST00000396828 ELAC1Q9H777 363 aaKnown RBP11.62□□□□□ -0.55
NEDD8-202ENST00000396828 WDR87Q6ZQQ6 2873 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 H3BQV1 296 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 M0R2N6 131 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 MAGEB2O15479 319 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 STX6O43752 255 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 PSMD10O75832 226 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 ATF7P17544 494 aaPredicted RBP11.61□□□□□ -0.55
NEDD8-202ENST00000396828 XBP1P17861 261 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 USP11P51784 963 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 UBE3AQ05086 875 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 TRIM29Q14134 588 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 TARBP2Q15633 366 aaKnown RBP11.61□□□□□ -0.55
NEDD8-202ENST00000396828 LRCH2Q5VUJ6 765 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 MCTP2Q6DN12 878 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 KCNT2Q6UVM3 1135 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 B3GNT9Q6UX72 402 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 ECHDC2Q86YB7 292 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 RNF169Q8NCN4 708 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 SUSD6Q92537 303 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 MRPS27Q92552 414 aaKnown RBP11.61□□□□□ -0.55
NEDD8-202ENST00000396828 TMEM117Q9H0C3 514 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 S1PR5Q9H228 398 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 AAASQ9NRG9 546 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 CEP131Q9UPN4 1083 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 CFAP54Q96N23 3096 aa11.61□□□□□ -0.55
NEDD8-202ENST00000396828 MEIS3P2A8K0S8 358 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 NT5C1B-RDH14C9J2C7 533 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 GAS7O60861 476 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 FDPSP14324 419 aaKnown RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 DARSP14868 501 aaKnown RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 SYT1P21579 422 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 NLRP5P59047 1200 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 PLCB3Q01970 1234 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 CBX2Q14781 532 aaPredicted RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 LONRF3Q496Y0 759 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 ODR4Q5SWX8 454 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 IER5LQ5T953 404 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 LLGL2Q6P1M3 1020 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 SYCE2Q6PIF2 218 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 ZNF598Q86UK7 904 aaKnown RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 TMEM173Q86WV6 379 aaPredicted RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 KSR1Q8IVT5 923 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 FEZF2Q8TBJ5 459 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 BICD2Q8TD16 824 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 HELQQ8TDG4 1101 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 EDAQ92838 391 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 PPP2R3CQ969Q6 453 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 C8orf76Q96K31 380 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 RPGRIP1Q96KN7 1286 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 FAM167AQ96KS9 214 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 MAP7D2Q96T17 732 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 POP1Q99575 1024 aaKnown RBP11.6□□□□□ -0.55
NEDD8-202ENST00000396828 RIT2Q99578 217 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 TCF25Q9BQ70 676 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 NRBP2Q9NSY0 501 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 GJB4Q9NTQ9 266 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 TCEAL9Q9UHQ7 104 aa11.6□□□□□ -0.55
NEDD8-202ENST00000396828 CYP3A7-CYP3A51PA0A087WV96 503 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 IGKV6-21A0A0C4DH24 114 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 A0A0U1RQF3 1178 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 VPS37CA5D8V6 355 aaPredicted RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 EML1O00423 815 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 ZSCAN20P17040 1043 aaPredicted RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 LAG3P18627 525 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 SP100P23497 879 aaPredicted RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 CYP3A7P24462 503 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 TMOD1P28289 359 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 NHLH1Q02575 133 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 TBC1D8BQ0IIM8 1120 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 MTERF2Q49AM1 385 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 Q4G0T1 1027 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 TMEM184AQ6ZMB5 413 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 CCDC148Q8NFR7 591 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 ETNPPLQ8TBG4 499 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 LPPQ93052 612 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 PHOX2BQ99453 314 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 TEKT3Q9BXF9 490 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 NIFKQ9BYG3 293 aaKnown RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 SEPT9Q9UHD8 586 aaPredicted RBP11.59□□□□□ -0.55
NEDD8-202ENST00000396828 PCDHA4Q9UN74 947 aa11.59□□□□□ -0.55
NEDD8-202ENST00000396828 A0A087WZ62 844 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 SLC37A4O43826 429 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 B4GALT3O60512 393 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ZSCAN22P10073 491 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-202ENST00000396828 TECP42680 631 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ZXDAP98168 799 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 PLA2G4FQ68DD2 849 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ANKRD54Q6NXT1 300 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 KANK3Q6NY19 840 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 TRIM67Q6ZTA4 783 aa11.58□□□□□ -0.56
NEDD8-202ENST00000396828 ANO5Q75V66 913 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms