RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF844Q08AG5 666 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L24Q0WX57 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 ASTE1Q2TB18 679 aaPredicted RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 NAALADL2Q58DX5 795 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 GALNT17Q6IS24 598 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L6PQ6QN14 398 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 DTHD1Q6ZMT9 781 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 BZW1Q7L1Q6 419 aaKnown RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 CENPTQ96BT3 561 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 ATG4CQ96DT6 458 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 SAAL1Q96ER3 474 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PCMTD1Q96MG8 357 aaPredicted RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 SPAG5Q96R06 1193 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 NUCKS1Q9H1E3 243 aaKnown RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 R3HDMLQ9H3Y0 253 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 BIN2Q9UBW5 565 aaPredicted RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 BAIAP2L1Q9UHR4 511 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 TMEM59LQ9UK28 342 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PCDHA4Q9UN74 947 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 TRPC6Q9Y210 931 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 BHMG1C9JSJ3 638 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 SKAP2O75563 359 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 ECHS1P30084 290 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 CUL1Q13616 776 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 PPP1R7Q15435 360 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 UAP1Q16222 522 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 CPLX4Q7Z7G2 160 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 BLIDQ8IZY5 108 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 P2RX5Q93086 422 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 STAMBPL1Q96FJ0 436 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 CNOT6LQ96LI5 555 aaKnown RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 KRT12Q99456 494 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 NOC4LQ9BVI4 516 aaKnown RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 RANBP17Q9H2T7 1088 aaKnown RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 AS3MTQ9HBK9 375 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 GBA2Q9HCG7 927 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 CNOT8Q9UFF9 292 aaKnown RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 SLC12A4Q9UP95 1085 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 PTPRFP10586 1907 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 ABCB11O95342 1321 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 RLFQ13129 1914 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 CFAP73A6NFT4 308 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 ANP32DO95626 131 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 MYO1EQ12965 1108 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 ZNF268Q14587 947 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 TRADDQ15628 312 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 CHADLQ6NUI6 762 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 ERO1BQ86YB8 467 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 CPXCR1Q8N123 301 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 TBC1D31Q96DN5 1066 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 C12orf42Q96LP6 360 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 AK8Q96MA6 479 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 INPP4AQ96PE3 977 aaPredicted RBP12.09□□□□□ -0.47
CUX1-204ENST00000393824 EDEM3Q9BZQ6 932 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.09□□□□□ -0.474e-7■■■□□ 17.6
CUX1-204ENST00000393824 RIPK3Q9Y572 518 aa12.09□□□□□ -0.47
CUX1-204ENST00000393824 SSU72P8A0A1W2PR75 194 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 RBAK-RBAKDNI3L0D1 243 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 LIN7AO14910 233 aaPredicted RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 RAD51CO43502 376 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 ALADP13716 330 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 HOXA13P31271 388 aaPredicted RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 CTNNA1P35221 906 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 UBA7P41226 1012 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 TNNC1P63316 161 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 PPATQ06203 517 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 TCP11Q8WWU5 503 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 THOC1Q96FV9 657 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 PAIP2Q9BPZ3 127 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 NDST4Q9H3R1 872 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 CNOT10Q9H9A5 744 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 KIF9Q9HAQ2 790 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 RAVER2Q9HCJ3 691 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 KCNMB3Q9NPA1 279 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 PPP1R9AQ9ULJ8 1098 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 SIK3Q9Y2K2 1263 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 A0A0G2JLL6 359 aaPredicted RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 MEIS2O14770 477 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 SMNDC1O75940 238 aaKnown RBP eCLIP12.08□□□□□ -0.481e-5■■□□□ 11.9
CUX1-204ENST00000393824 MTIF2P46199 727 aaKnown RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 ODF2Q5BJF6 829 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 SH3D19Q5HYK7 790 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 ERMARDQ5T6L9 678 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 MIS18BP1Q6P0N0 1132 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 PRRT2Q7Z6L0 340 aaPredicted RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 CCDC63Q8NA47 563 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 DAGLBQ8NCG7 672 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 CCDC197Q8NCU1 140 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 CHMP6Q96FZ7 201 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 C7orf25Q9BPX7 421 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 SLC39A2Q9NP94 309 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 FEM1BQ9UK73 627 aa12.08□□□□□ -0.48
CUX1-204ENST00000393824 CORO1CQ9ULV4 474 aaPredicted RBP12.08□□□□□ -0.48
CUX1-204ENST00000393824 VWA5AO00534 786 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 CES2O00748 559 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 RWDD2BP57060 319 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 MTMR3Q13615 1198 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 ITIH4Q14624 930 aa12.07□□□□□ -0.48
CUX1-204ENST00000393824 INF2Q27J81 1249 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms