RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 C1orf146Q5VVC0 180 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 FBXO40Q9UH90 709 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 PALMO75781 387 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 MAP3K7CLP57077 242 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 NR5A1Q13285 461 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 RGS9BPQ6ZS82 235 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 SCN4BQ8IWT1 228 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ELAC2Q9BQ52 826 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 C2orf40Q9H1Z8 148 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ARHGAP26Q9UNA1 814 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 TSSK1BQ9BXA7 367 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 IP6K2Q9UHH9 426 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 DNAJC12Q9UKB3 198 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 USP17L8P0C7I0 530 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 QTRT2Q9H974 415 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 RCOR1Q9UKL0 485 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 STAP1Q9ULZ2 295 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 HEY1Q9Y5J3 304 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ZFYVE16Q7Z3T8 1539 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ERVV-1B6SEH8 477 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF568Q3ZCX4 644 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 MIGA2Q7L4E1 593 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 TAGAPQ8N103 731 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 HIPK4Q8NE63 616 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ARHGEF1Q92888 912 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 VPS11Q9H270 941 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 RAD17O75943 681 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 KITP10721 976 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 CIAPIN1Q6FI81 312 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 SH3KBP1Q96B97 665 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 EGFL8Q99944 293 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 DDX50Q9BQ39 737 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 COA1Q9GZY4 146 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 HOXC10Q9NYD6 342 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 GOLGA8MH3BSY2 632 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 PRPF4O43172 522 aaKnown RBP eCLIP13.62□□□□□ -0.232e-7■■■■□ 25.5
CCDC88C-204ENST00000389857 WASHC5Q12768 1159 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 KRT31Q15323 416 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF589Q86UQ0 364 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 CEP70Q8NHQ1 597 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 SARS2Q9NP81 518 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 ZFXP17010 805 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 DMTNQ08495 405 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 PKP1Q13835 747 aa13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 RBM46Q8TBY0 533 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-204ENST00000389857 PIK3R2O00459 728 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ASNSP08243 561 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 KRT7P08729 469 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 MAPRE2Q15555 327 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 KYAT1Q16773 422 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 RESP18Q5W5W9 173 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TWF2Q6IBS0 349 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PBXIP1Q96AQ6 731 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PZPP20742 1482 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 MFAP3LO75121 409 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 HEATR6Q6AI08 1181 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ASIC4Q96FT7 647 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TLR7Q9NYK1 1049 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ZSWIM5Q9P217 1185 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PCDHA6Q9UN73 950 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PCDHB6Q9Y5E3 794 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PCDHA8Q9Y5H6 950 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF263O14978 683 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 AP1B1Q10567 949 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 BTBD6Q96KE9 485 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 OSBPL3Q9H4L5 887 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 LIFRP42702 1097 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 NEK2P51955 445 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ROR1Q01973 937 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 KRT72Q14CN4 511 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TMED8Q6PL24 325 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ICA1LQ8NDH6 482 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ABHD8Q96I13 439 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 BHMT2Q9H2M3 363 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 DYRK4Q9NR20 520 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TBC1D22BQ9NU19 505 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 PPP1R18Q6NYC8 613 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 RRM2BQ7LG56 351 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TADA2BQ86TJ2 420 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 TBC1D19Q8N5T2 526 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 ADA2Q9NZK5 511 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 SELENONQ9NZV5 590 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 DAB2P98082 770 aa13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 NFX1Q12986 1120 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 CDKL3Q8IVW4 592 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-204ENST00000389857 DNAJC6O75061 913 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 TAP1Q03518 808 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 EFHC2Q5JST6 749 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 NUDT18Q6ZVK8 323 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 C2orf69Q8N8R5 385 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 PLEKHG1Q9ULL1 1385 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 XXYLT1Q8NBI6 393 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 KIF2CQ99661 725 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 ABCB6Q9NP58 842 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 POU5F1BQ06416 359 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 GRAPQ13588 217 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 NBPF9Q3BBW0 867 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 TBC1D1Q86TI0 1168 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 THNSL1Q8IYQ7 743 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms