RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ALAS1P13196 640 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 TERF2Q15554 542 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 IRF2BP2Q7Z5L9 587 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 CREG2Q8IUH2 290 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 FMNL3Q8IVF7 1028 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 TIPINQ9BVW5 301 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 STRA6Q9BX79 667 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 ABCB6Q9NP58 842 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 FRMD4BQ9Y2L6 1034 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 CTDP1Q9Y5B0 961 aaPredicted RBP23.52■■□□□ 1.36
TRIM54-202ENST00000380075 DHX15O43143 795 aaKnown RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 ZBED4O75132 1171 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 SMC1AQ14683 1233 aaKnown RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 BANK1Q8NDB2 785 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 TMEM174Q8WUU8 243 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 OSBPL9Q96SU4 736 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 GCNT4Q9P109 453 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 EIF3JO75822 258 aaKnown RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 PPP1R37O75864 691 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 FLOT1O75955 427 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 ACTN1P12814 892 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 APBA1Q02410 837 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 ZC2HC1CQ53FD0 456 aaPredicted RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 CATSPERGQ6ZRH7 1159 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 MMGT1Q8N4V1 131 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 BCAS3Q9H6U6 928 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 RAVER2Q9HCJ3 691 aaKnown RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 AGPAT3Q9NRZ7 376 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 LARSQ9P2J5 1176 aaKnown RBP23.51■■□□□ 1.35
TRIM54-202ENST00000380075 SALL4Q9UJQ4 1053 aa23.51■■□□□ 1.35
TRIM54-202ENST00000380075 A0A087X0T9 212 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 HIP1RO75146 1068 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 FAM228BP0C875 321 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 CYP2C8P10632 490 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 MAPK7Q13164 816 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 MTMR1Q13613 665 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 PADI6Q6TGC4 694 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 VPS36Q86VN1 386 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 CPXCR1Q8N123 301 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 IL31RAQ8NI17 732 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 SIX2Q9NPC8 291 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 THSD7BQ9C0I4 1608 aa23.5■■□□□ 1.35
TRIM54-202ENST00000380075 ZNF185O15231 689 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 GFPT2O94808 682 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 QARSP47897 775 aaKnown RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 JAM2P57087 298 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 XRRA1Q6P2D8 792 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 ASCC2Q9H1I8 757 aaPredicted RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 TMEM206Q9H813 350 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 POLD4Q9HCU8 107 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 ADAMTS1Q9UHI8 967 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 SLC45A1Q9Y2W3 748 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 PCDHGC5Q9Y5F6 944 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 LOC285556D6RIA3 1793 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 PDE2AO00408 941 aaPredicted RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 PAFAH1B1P43034 410 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 NAP1L1P55209 391 aaKnown RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 MRPS9P82933 396 aaKnown RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 ARID5AQ03989 594 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 IFI16Q16666 785 aaKnown RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 ZFP91Q96JP5 570 aaPredicted RBP23.49■■□□□ 1.35
TRIM54-202ENST00000380075 ACBD3Q9H3P7 528 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 RNF186Q9NXI6 227 aa23.49■■□□□ 1.35
TRIM54-202ENST00000380075 DDX39AO00148 427 aaKnown RBP23.48■■□□□ 1.35
TRIM54-202ENST00000380075 TRPA1O75762 1119 aa23.48■■□□□ 1.35
TRIM54-202ENST00000380075 MAP2K1Q02750 393 aaPredicted RBP23.48■■□□□ 1.35
TRIM54-202ENST00000380075 ITGB3BPQ13352 177 aaPredicted RBP23.48■■□□□ 1.35
TRIM54-202ENST00000380075 KIAA0753Q2KHM9 967 aa23.48■■□□□ 1.35
TRIM54-202ENST00000380075 MUM1L1Q5H9M0 696 aa23.48■■□□□ 1.35
TRIM54-202ENST00000380075 FERP16591 822 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 SFNP31947 248 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 JAK3P52333 1124 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 RPS6P62753 249 aaKnown RBP23.47■■□□□ 1.35
TRIM54-202ENST00000380075 IRX3P78415 501 aaPredicted RBP23.47■■□□□ 1.35
TRIM54-202ENST00000380075 PTK2Q05397 1052 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 PGM5Q15124 567 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 TAF1CQ15572 869 aaPredicted RBP23.47■■□□□ 1.35
TRIM54-202ENST00000380075 CCDC181Q5TID7 509 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 GPIHBP1Q8IV16 184 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 DAW1Q8N136 415 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 ANKRD13CQ8N6S4 541 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 SLC17A8Q8NDX2 589 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 DRC1Q96MC2 740 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 TLR10Q9BXR5 811 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 ZCCHC17Q9NP64 241 aaKnown RBP23.47■■□□□ 1.35
TRIM54-202ENST00000380075 ALDH1A1P00352 501 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 OSBPP22059 807 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 FMO5P49326 533 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 RARRES1P49788 294 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 SNRPFP62306 86 aaKnown RBP23.47■■□□□ 1.35
TRIM54-202ENST00000380075 C12orf56Q8IXR9 622 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 C4orf19Q8IY42 314 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 SYCP3Q8IZU3 236 aa23.47■■□□□ 1.35
TRIM54-202ENST00000380075 BUB1O43683 1085 aa23.46■■□□□ 1.35
TRIM54-202ENST00000380075 RFX1P22670 979 aa23.46■■□□□ 1.35
TRIM54-202ENST00000380075 KLRC1P26715 233 aa23.46■■□□□ 1.35
TRIM54-202ENST00000380075 STAT1P42224 750 aa23.46■■□□□ 1.35
TRIM54-202ENST00000380075 RNF207Q6ZRF8 634 aa23.46■■□□□ 1.35
TRIM54-202ENST00000380075 ZNF571Q7Z3V5 609 aaPredicted RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms