RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 RC3H1Q5TC82 1133 aaKnown RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 SPATA1Q5VX52 437 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 ARHGAP17Q68EM7 881 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 FAM173BQ6P4H8 233 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 P3H2Q8IVL5 708 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 MTERF3Q96E29 417 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 KIAA1468Q9P260 1216 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 SAC3D1A6NKF1 404 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 ERN1O75460 977 aaKnown RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 EPB42P16452 691 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 HMOX2P30519 316 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 ATXN3P54252 364 aaPredicted RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 ADCY2Q08462 1091 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 TRIM32Q13049 653 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 NR1H3Q13133 447 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 RABGAP1LQ5R372 815 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 RARS2Q5T160 578 aaKnown RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 ICA1LQ8NDH6 482 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 PBKQ96KB5 322 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 FMO2Q99518 471 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 OSBPL6Q9BZF3 934 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 PPP2R2CQ9Y2T4 447 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 PCDHA5Q9Y5H7 936 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 RGS5O15539 181 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 SGSM2O43147 1006 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ALDH1A1P00352 501 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 CD58P19256 250 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 BCAMP50895 628 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 SNAP25P60880 206 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 PI4K2BQ8TCG2 481 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ASAP3Q8TDY4 903 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 DBNDD2Q9BQY9 259 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ADNPQ9H2P0 1102 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 DDX56Q9NY93 547 aaKnown RBP11.3□□□□□ -0.6
RTN3-206ENST00000377819 TET3O43151 1660 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 TCP10L2B9ZVM9 353 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 K7ERI5 159 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 HUS1O60921 280 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 LRRN2O75325 713 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 GRK2P25098 689 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 NDUFA5Q16718 116 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 FAM47AQ5JRC9 791 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 APOA5Q6Q788 366 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 KIAA0825Q8IV33 1275 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 CNPY4Q8N129 248 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ZNF555Q8NEP9 628 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 VPS37AQ8NEZ2 397 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 SPATA16Q9BXB7 569 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 LSG1Q9H089 658 aaKnown RBP11.3□□□□□ -0.6
RTN3-206ENST00000377819 PCDHB8Q9UN66 801 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 KIAA1024Q9UPX6 916 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 M0R3G1 203 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 MAP3K13O43283 966 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 TJP3O95049 919 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 PLS3P13797 630 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 AP2B1P63010 937 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 BFSP2Q13515 415 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 RASGRF1Q13972 1273 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 NBPF9Q3BBW0 867 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 VPS50Q96JG6 964 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 PRPF18Q99633 342 aaKnown RBP11.3□□□□□ -0.6
RTN3-206ENST00000377819 H0Y3Z8 333 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 H7C0S8 307 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ABCB5Q2M3G0 1257 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ITPRIPL1Q6GPH6 555 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 PDXDC2PQ6P474 469 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 TBC1D1Q86TI0 1168 aaPredicted RBP11.3□□□□□ -0.6
RTN3-206ENST00000377819 CATSPER1Q8NEC5 780 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ANKRD49Q8WVL7 239 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 VMP1Q96GC9 406 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 TUBGCP2Q9BSJ2 902 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 ZNF577Q9BSK1 485 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 HDAC6Q9UBN7 1215 aa11.3□□□□□ -0.6
RTN3-206ENST00000377819 TRPM1Q7Z4N2 1603 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 ZC3H13Q5T200 1668 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 SLC27A2O14975 620 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 DIAPH2O60879 1101 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 KRT16P08779 473 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TMED10P49755 219 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 INPP5AQ14642 412 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TNNI3KQ59H18 835 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 SH3BP5LQ7L8J4 393 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 HORMAD1Q86X24 394 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 DDIASQ8IXT1 998 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 PLBD2Q8NHP8 589 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 RMDN1Q96DB5 314 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 DDX50Q9BQ39 737 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 PDE11AQ9HCR9 933 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 NOVA2Q9UNW9 492 aaKnown RBP11.29□□□□□ -0.6
RTN3-206ENST00000377819 CCDC141Q6ZP82 1450 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TK2O00142 265 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 FKBP9O95302 570 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 HSPA2P54652 639 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 OSTNP61366 133 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TRADDQ15628 312 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 CDO1Q16878 200 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 FKBP9P1Q75LS8 142 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 SPATA5Q8NB90 893 aa11.29□□□□□ -0.6
RTN3-206ENST00000377819 TMEM35BQ8NCS4 154 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms