RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PTPN5P54829 565 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 FOXK2Q01167 660 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 EIF4A2Q14240 407 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 ME3Q16798 604 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 FOXD4L5Q5VV16 416 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 ICE2Q659A1 982 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ATL3Q6DD88 541 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 HERC6Q8IVU3 1022 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NRSN1Q8IZ57 195 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NME8Q8N427 588 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 IQUBQ8NA54 791 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PHC3Q8NDX5 983 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 STAG1Q8WVM7 1258 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 FOXD4L4Q8WXT5 416 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 SEPT5Q99719 369 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 DRC3Q9H069 523 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SEMA4AQ9H3S1 761 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PLEKHA5Q9HAU0 1116 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NGRNQ9NPE2 291 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 KMT5AQ9NQR1 393 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 HELLSQ9NRZ9 838 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NRBP1Q9UHY1 535 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 DDX49Q9Y6V7 483 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 NPC1L1Q9UHC9 1359 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 KDM4FA0A1W2PPD8 638 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CLIC2O15247 247 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 DNTTP04053 509 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CLTBP09497 229 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 JMJD7P0C870 316 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 GRK3P35626 688 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CKAP4Q07065 602 aaKnown RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 SLC20A1Q8WUM9 679 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CDCA7LQ96GN5 454 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CTAGE1Q96RT6 745 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 CD209Q9NNX6 404 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ZCCHC17Q9NP64 241 aaKnown RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 SENP1Q9P0U3 644 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 PZPP20742 1482 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 MAGI3Q5TCQ9 1506 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 PRPF4O43172 522 aaKnown RBP eCLIP4.4□□□□□ -1.71
USH2A-202ENST00000366942 GCATO75600 419 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 MYO1DO94832 1006 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 GAP43P17677 238 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 AP3M2P53677 418 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 TPD52P55327 224 aaPredicted RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 NFIAQ12857 509 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 NMIQ13287 307 aaPredicted RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 PLCL1Q15111 1095 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 RPS6KA2Q15349 733 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ATP13A4Q4VNC1 1196 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 SYTL3Q4VX76 610 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 PAN2Q504Q3 1202 aaKnown RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 C2orf27AQ580R0 203 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ZNF667Q5HYK9 610 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 TTC38Q5R3I4 469 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ANKRD20A2Q5SQ80 823 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ANKRD20A3Q5VUR7 823 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 ESRP1Q6NXG1 681 aaKnown RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 NAP1L3Q99457 506 aaPredicted RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 OSBPL1AQ9BXW6 950 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 STMN4Q9H169 189 aaPredicted RBP4.4□□□□□ -1.71
USH2A-202ENST00000366942 TMEM206Q9H813 350 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 TSKSQ9UJT2 592 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 DAAM1Q9Y4D1 1078 aa4.4□□□□□ -1.71
USH2A-202ENST00000366942 A0A1B0GUL7 405 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 FAM47DPA6NHR8 397 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TAF5LO75529 589 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ADH1CP00326 375 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ALOX5P09917 674 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PIM1P11309 404 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 EIF2AK2P19525 551 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 TNFAIP3P21580 790 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 RRM1P23921 792 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CDC27P30260 824 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 NCKAP1LP55160 1127 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 RPP38P78345 283 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 ARHGAP8P85298 464 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 BNC1Q01954 994 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 BDH1Q02338 343 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 LMNB2Q03252 620 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 IFFO1Q0D2I5 559 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 MXD4Q14582 209 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 SBK1Q52WX2 424 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ERAP2Q6P179 960 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 FAM178BQ8IXR5 827 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 DENND1AQ8TEH3 1009 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 SNX29Q8TEQ0 813 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 POMGNT1Q8WZA1 660 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 VPS39Q96JC1 886 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PLCB1Q9NQ66 1216 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 EDC4Q6P2E9 1401 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 KRT87PA6NCN2 255 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CLGNO14967 610 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 KIAA0391O15091 583 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 PCDH8O95206 1070 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 DEXIO95424 95 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ASGR1P07306 291 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PDGFRBP09619 1106 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TNNT1P13805 278 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms