RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 KLRK1P26718 216 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 HOXA13P31271 388 aaPredicted RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 SESN3P58005 492 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 TAF1BQ53T94 588 aaPredicted RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 TTC19Q6DKK2 380 aaPredicted RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 RNF139Q8WU17 664 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 RMDN3Q96TC7 470 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 TRIM55Q9BYV6 548 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 NOC2LQ9Y3T9 749 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 POTEMA6NI47 508 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 PDXKO00764 312 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CHEK2O96017 543 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CHRNA5P30532 468 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 PHKA2P46019 1235 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DHX34Q14147 1143 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CRLF3Q8IUI8 442 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 PLCD3Q8N3E9 789 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 TAB3Q8N5C8 712 aaPredicted RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 C7orf31Q8N865 590 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 OSBPL9Q96SU4 736 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 POLD4Q9HCU8 107 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 ORC6Q9Y5N6 252 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CSF1RP07333 972 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 XPAP23025 273 aaPredicted RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 SBK1Q52WX2 424 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DALRD3Q5D0E6 543 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 ELOA2Q8IYF1 753 aaPredicted RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 ATP6V1E2Q96A05 226 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CEP95Q96GE4 821 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 MRPL40Q9NQ50 206 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 SCAF8Q9UPN6 1271 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 SLC16A3O15427 465 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 CD58P19256 250 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DYNLT1P63172 113 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 ARID5BQ14865 1188 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DDX27Q96GQ7 796 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 PITPNM3Q9BZ71 974 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DDX56Q9NY93 547 aaKnown RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 SCOCQ9UIL1 159 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 GNAT1P11488 350 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 TAC1P20366 129 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 GUCY2CP25092 1073 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 VAMP7P51809 220 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 EN1Q05925 392 aaPredicted RBP12.56□□□□□ -0.4
COL9A1-202ENST00000357250 NUGGCQ68CJ6 796 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 SHC4Q6S5L8 630 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 DEPDC1BQ8WUY9 529 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 RFFLQ8WZ73 363 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 HINFPQ9BQA5 517 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 TMEM60Q9H2L4 133 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 TUFT1Q9NNX1 390 aa12.56□□□□□ -0.4
COL9A1-202ENST00000357250 MAP3K7O43318 606 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 PLS3P13797 630 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SLCO1A2P46721 670 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 PSMC5P62195 406 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 EPHA7Q15375 998 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SLC27A3Q5K4L6 730 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 HIBCHQ6NVY1 386 aaPredicted RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 UPF3AQ9H1J1 476 aaKnown RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 TAF1DQ9H5J8 278 aaPredicted RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SMYD2Q9NRG4 433 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 IP6K2Q9UHH9 426 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 TTC26A0AVF1 554 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 TTC36A6NLP5 189 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 TBX3O15119 743 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 MAGEA9P43362 315 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SLC7A5Q01650 507 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 GPR162Q16538 588 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SPOPLQ6IQ16 392 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 ZBTB33Q86T24 672 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 DHX40Q8IX18 779 aaKnown RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 PDZD8Q8NEN9 1154 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 GCOM2Q9BZD3 368 aaPredicted RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SSU72P8A0A1W2PR75 194 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 KIF28PB7ZC32 967 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 COPEO14579 308 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 CTIFO43310 598 aaKnown RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 FSCBQ5H9T9 825 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 PRPF38AQ8NAV1 312 aaKnown RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 PSPC1Q8WXF1 523 aaKnown RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 GRAMD1AQ96CP6 724 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 MAP3K14Q99558 947 aa12.55□□□□□ -0.4
COL9A1-202ENST00000357250 SUDS3Q9H7L9 328 aaPredicted RBP12.55□□□□□ -0.4
COL9A1-202ENST00000357250 TRIM49BA6NDI0 452 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 KPNA7A9QM74 516 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 TOM1L1O75674 476 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 MMEP08473 750 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PAPOLAP51003 745 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 MKRN3Q13064 507 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SYT2Q8N9I0 419 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SCG3Q8WXD2 468 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 TRIM15Q9C019 465 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SENP1Q9P0U3 644 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 MRFAP1Q9Y605 127 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 E9PMD0 336 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 NTSR2O95665 410 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 EYA4O95677 639 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 ART3Q13508 389 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SYDE1Q6ZW31 735 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 NDUFAF2Q8N183 169 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms