RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TECP42680 631 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 TOB1P50616 345 aaPredicted RBP20.52■□□□□ 0.88
CLN3-202ENST00000355477 KCNQ1P51787 676 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 LAMTOR4Q0VGL1 99 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 ECHDC2Q86YB7 292 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 EXOC8Q8IYI6 725 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 C4orf32Q8N8J7 132 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 IL27Q8NEV9 243 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 NEK9Q8TD19 979 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 PIGOQ8TEQ8 1089 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 PLVAPQ9BX97 442 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 XPNPEP1Q9NQW7 623 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 PLAGL2Q9UPG8 496 aa20.52■□□□□ 0.88
CLN3-202ENST00000355477 OR52Z1P0C646 297 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 BMP1P13497 986 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 DNAJB1P25685 340 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 ORC2Q13416 577 aaPredicted RBP20.51■□□□□ 0.87
CLN3-202ENST00000355477 CAMK1Q14012 370 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 CATSPER3Q86XQ3 398 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 KLHL23Q8NBE8 558 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 PSPC1Q8WXF1 523 aaKnown RBP20.51■□□□□ 0.87
CLN3-202ENST00000355477 SYMPKQ92797 1274 aaKnown RBP20.51■□□□□ 0.87
CLN3-202ENST00000355477 MINDY3Q9H8M7 445 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 ANKEF1Q9NU02 776 aa20.51■□□□□ 0.87
CLN3-202ENST00000355477 TYW1Q9NV66 732 aaKnown RBP20.51■□□□□ 0.87
CLN3-202ENST00000355477 A0A0U1RQF3 1178 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 MED24O75448 989 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 ITGB1P05556 798 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 ATF7P17544 494 aaPredicted RBP20.5■□□□□ 0.87
CLN3-202ENST00000355477 SFPQP23246 707 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLN3-202ENST00000355477 TRAPPC10P48553 1259 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 TCEAL5Q5H9L2 206 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 LRRC55Q6ZSA7 311 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 ZNF598Q86UK7 904 aaKnown RBP20.5■□□□□ 0.87
CLN3-202ENST00000355477 FERMT3Q86UX7 667 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 RNF169Q8NCN4 708 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 SPPL3Q8TCT6 385 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 TCP11Q8WWU5 503 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 P2RX5Q93086 422 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 CASD1Q96PB1 797 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 MTRQ99707 1265 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 INO80BQ9C086 356 aaPredicted RBP20.5■□□□□ 0.87
CLN3-202ENST00000355477 CWH43Q9H720 699 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 CHST12Q9NRB3 414 aa20.5■□□□□ 0.87
CLN3-202ENST00000355477 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.49■□□□□ 0.87
CLN3-202ENST00000355477 GAS2O43903 313 aaKnown RBP20.49■□□□□ 0.87
CLN3-202ENST00000355477 CSPG5O95196 566 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 GJB2P29033 226 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 MCM2P49736 904 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 RARRES1P49788 294 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 TIGD5Q53EQ6 642 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 NAALADL2Q58DX5 795 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 CLLU1OSQ5K130 101 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 CATSPER4Q7RTX7 472 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 LMAN2LQ9H0V9 348 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 TUFT1Q9NNX1 390 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 DACT1Q9NYF0 836 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 NOL7Q9UMY1 257 aaKnown RBP20.49■□□□□ 0.87
CLN3-202ENST00000355477 PCDHB6Q9Y5E3 794 aa20.49■□□□□ 0.87
CLN3-202ENST00000355477 ASAP2O43150 1006 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 EOMESO95936 686 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 XRCC6P12956 609 aaKnown RBP eCLIP20.48■□□□□ 0.87
CLN3-202ENST00000355477 AAK1Q2M2I8 961 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 SPOUT1Q5T280 376 aaKnown RBP20.48■□□□□ 0.87
CLN3-202ENST00000355477 RNF149Q8NC42 400 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 ADAMTS19Q8TE59 1207 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 POLR3CQ9BUI4 534 aaPredicted RBP20.48■□□□□ 0.87
CLN3-202ENST00000355477 TMEM117Q9H0C3 514 aa20.48■□□□□ 0.87
CLN3-202ENST00000355477 NSUN3Q9H649 340 aaKnown RBP20.48■□□□□ 0.87
CLN3-202ENST00000355477 UBE2ZQ9H832 354 aaPredicted RBP20.48■□□□□ 0.87
CLN3-202ENST00000355477 PIN4Q9Y237 131 aaKnown RBP20.48■□□□□ 0.87
CLN3-202ENST00000355477 DGAT1O75907 488 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 PHKA2P46019 1235 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 PTGDRQ13258 359 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 MCTP1Q6DN14 999 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 TWF2Q6IBS0 349 aaKnown RBP20.47■□□□□ 0.87
CLN3-202ENST00000355477 SRGAP1Q7Z6B7 1085 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 COLGALT1Q8NBJ5 622 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 TRAIPQ9BWF2 469 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 BACH2Q9BYV9 841 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 KIF3AQ9Y496 699 aa20.47■□□□□ 0.87
CLN3-202ENST00000355477 HOXA2O43364 376 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 RPA1P27694 616 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 HOXA11P31270 313 aaPredicted RBP20.46■□□□□ 0.87
CLN3-202ENST00000355477 ARL2P36404 184 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 FXR2P51116 673 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-202ENST00000355477 ECM1Q16610 540 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 LONRF3Q496Y0 759 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 POTEGQ6S5H5 508 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 HELQQ8TDG4 1101 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 ASAP3Q8TDY4 903 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 POF1BQ8WVV4 589 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 LPPQ93052 612 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 AGPAT5Q9NUQ2 364 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 PCDHB12Q9Y5F1 795 aa20.46■□□□□ 0.87
CLN3-202ENST00000355477 MEIS3P2A8K0S8 358 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 KCNA5P22460 613 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 IRS1P35568 1242 aa20.45■□□□□ 0.86
CLN3-202ENST00000355477 MXD4Q14582 209 aaPredicted RBP20.45■□□□□ 0.86
CLN3-202ENST00000355477 COL19A1Q14993 1142 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms