RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NDUFB10O96000 172 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 ZBTB48P10074 688 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 BMP3P12645 472 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 PRKCIP41743 596 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TECP42680 631 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 JAG1P78504 1218 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 PPP1R7Q15435 360 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TRADDQ15628 312 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TMEM119Q4V9L6 283 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 ZNF317Q96PQ6 595 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TMEM109Q9BVC6 243 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TMEM39BQ9GZU3 492 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 GANQ9H2C0 597 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 GOPCQ9HD26 462 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 BMP2KQ9NSY1 1161 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.2■□□□□ 0.349e-9■■■□□ 17.2
HMGA1-202ENST00000347617 CNOT7Q9UIV1 285 aaKnown RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 USP17L10C9JJH3 530 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 TRAF5O00463 557 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 NKRFO15226 690 aaKnown RBP eCLIP17.19■□□□□ 0.341e-6■□□□□ 10.1
HMGA1-202ENST00000347617 CTNND1O60716 968 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 SSBP05455 408 aaKnown RBP eCLIP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 ASNSP08243 561 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 ALADP13716 330 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 MMP13P45452 471 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 CLK2P49760 499 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 GMPSP49915 693 aaPredicted RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 ZNF131P52739 623 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 DRG2P55039 364 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 DHX9Q08211 1270 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 KRT79Q5XKE5 535 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 HIBCHQ6NVY1 386 aaPredicted RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 OR2W6PQ8NHA6 318 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 TPCN2Q8NHX9 752 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 PNMA5Q96PV4 448 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 MTMR9Q96QG7 549 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 NAP1L4Q99733 375 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 POLD4Q9HCU8 107 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 NOP53Q9NZM5 478 aaKnown RBP17.19■□□□□ 0.34
HMGA1-202ENST00000347617 STXBP5LQ9Y2K9 1186 aa17.19■□□□□ 0.34
HMGA1-202ENST00000347617 AGTP01019 485 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 EPS15P42566 896 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 PRELPP51888 382 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 ZNF268Q14587 947 aaPredicted RBP17.18■□□□□ 0.34
HMGA1-202ENST00000347617 RASA3Q14644 834 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 E2F5Q15329 346 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 EDRF1Q3B7T1 1238 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 C6orf118Q5T5N4 469 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 PEX26Q7Z412 305 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 COA7Q96BR5 231 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 TEPSINQ96N21 525 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 FMO2Q99518 471 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 NEUROG2Q9H2A3 272 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.18■□□□□ 0.34
HMGA1-202ENST00000347617 ADAMTS1Q9UHI8 967 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 C15orf41Q9Y2V0 281 aa17.18■□□□□ 0.34
HMGA1-202ENST00000347617 A0A1W2PRG0 241 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 PHF20L1A8MW92 1017 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 DAPK3O43293 454 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 PPP1R11O60927 126 aaPredicted RBP17.17■□□□□ 0.34
HMGA1-202ENST00000347617 NEBLO76041 1014 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 SLC16A2P36021 539 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 DNA2P51530 1060 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 ADCY2Q08462 1091 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 DHX34Q14147 1143 aaKnown RBP17.17■□□□□ 0.34
HMGA1-202ENST00000347617 NAA25Q14CX7 972 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 CALCRLQ16602 461 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 SHROOM1Q2M3G4 852 aaPredicted RBP17.17■□□□□ 0.34
HMGA1-202ENST00000347617 SPRED3Q2MJR0 410 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 FAM26FQ5R3K3 315 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 SYDE2Q5VT97 1194 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 MICALL2Q8IY33 904 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 METTL13Q8N6R0 699 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 NLGN2Q8NFZ4 835 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 BAIAP2L1Q9UHR4 511 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 PACSIN2Q9UNF0 486 aaPredicted RBP17.17■□□□□ 0.34
HMGA1-202ENST00000347617 MMEP08473 750 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 LMNB1P20700 586 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 CCND1P24385 295 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 QRICH1Q2TAL8 776 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 CCDC65Q8IXS2 484 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 NEK9Q8TD19 979 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 DDX12PQ92771 950 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 HPS3Q969F9 1004 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 AMNQ9BXJ7 453 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 PSTPIP2Q9H939 334 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 HOMER3Q9NSC5 361 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 PARP2Q9UGN5 583 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 RASAL2Q9UJF2 1139 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 NENFQ9UMX5 172 aa17.17■□□□□ 0.34
HMGA1-202ENST00000347617 KDM3AQ9Y4C1 1321 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 H2AFZP0C0S5 128 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 HSPA6P17066 643 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 COASYQ13057 564 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 H2AFVQ71UI9 128 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 TRPM8Q7Z2W7 1104 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 FAM133AQ8N9E0 248 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 TBCKQ8TEA7 893 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 CHURC1Q8WUH1 139 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 ATXN2LQ8WWM7 1075 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms