RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PALB2Q86YC2 1186 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 WNK4Q96J92 1243 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 CBWD1Q9BRT8 395 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 KIAA1683Q9H0B3 1180 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 VPS33BQ9H267 617 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 OSGEPQ9NPF4 335 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 NFU1Q9UMS0 254 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 STXBP5LQ9Y2K9 1186 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 TMCO5BA8MYB1 307 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 RAD51CO43502 376 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 QARSP47897 775 aaKnown RBP16.8■□□□□ 0.28
UPF3B-202ENST00000345865 ZSCAN26Q16670 478 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 ARHGAP44Q17R89 818 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 CIAPIN1Q6FI81 312 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 EMBQ6PCB8 327 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 VPS36Q86VN1 386 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 METTL13Q8N6R0 699 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 LPAR1Q92633 364 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 CAVIN3Q969G5 261 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 GPRC5CQ9NQ84 441 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 ATP8B3O60423 1300 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 IGSF9BQ9UPX0 1349 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 A0A0A6YYK5 440 aaPredicted RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 CES2O00748 559 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 ACTN2P35609 894 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 PPP3CAQ08209 521 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 PGM5Q15124 567 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 TBC1D10BQ4KMP7 808 aaPredicted RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 C1orf220Q5T0J3 134 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 POTEAQ6S8J7 498 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 MCF2L2Q86YR7 1114 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 GOLGA5Q8TBA6 731 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 PLEKHO2Q8TD55 490 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 CASKIN2Q8WXE0 1202 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 TAS2R14Q9NYV8 317 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 LARSQ9P2J5 1176 aaKnown RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 DBR1Q9UK59 544 aaKnown RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 INTUQ9ULD6 942 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 FOXN3O00409 490 aaPredicted RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 VCAM1P19320 739 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 YWHABP31946 246 aaKnown RBP16.79■□□□□ 0.28
UPF3B-202ENST00000345865 DEFB132Q7Z7B7 95 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 NT5DC3Q86UY8 548 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 KLHL7Q8IXQ5 586 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 IFT20Q8IY31 132 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 SCFD2Q8WU76 684 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 IFT81Q8WYA0 676 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 TAF4BQ92750 862 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 EMSYQ7Z589 1322 aa16.79■□□□□ 0.28
UPF3B-202ENST00000345865 BACH1O14867 736 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 CEP104O60308 925 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 CCNE2O96020 404 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 MYCLP12524 364 aaPredicted RBP16.78■□□□□ 0.28
UPF3B-202ENST00000345865 PLS3P13797 630 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 MTMR2Q13614 643 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 IFI16Q16666 785 aaKnown RBP16.78■□□□□ 0.28
UPF3B-202ENST00000345865 PROCA1Q8NCQ7 364 aaPredicted RBP16.78■□□□□ 0.28
UPF3B-202ENST00000345865 ACTRT1Q8TDG2 376 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 AFAP1L1Q8TED9 768 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 SH3GL2Q99962 352 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 CALCOCO1Q9P1Z2 691 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 PPP1R9AQ9ULJ8 1098 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 RIPK3Q9Y572 518 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 LYPLA2O95372 231 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 MYBPC2Q14324 1141 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 TNIP1Q15025 636 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 PEX26Q7Z412 305 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 DAAM2Q86T65 1068 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 ARHGEF19Q8IW93 802 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 SLC35G2Q8TBE7 412 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 ARHGEF26Q96DR7 871 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 PBKQ96KB5 322 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 AP1M1Q9BXS5 423 aa16.78■□□□□ 0.28
UPF3B-202ENST00000345865 BUB1BO60566 1050 aaPredicted RBP16.77■□□□□ 0.28
UPF3B-202ENST00000345865 ABCB4P21439 1286 aa16.77■□□□□ 0.28
UPF3B-202ENST00000345865 NPEPPSP55786 919 aa16.77■□□□□ 0.28
UPF3B-202ENST00000345865 PLA2G4FQ68DD2 849 aa16.77■□□□□ 0.28
UPF3B-202ENST00000345865 HAUS6Q7Z4H7 955 aa16.77■□□□□ 0.28
UPF3B-202ENST00000345865 PDCD2LQ9BRP1 358 aa16.77■□□□□ 0.28
UPF3B-202ENST00000345865 SLC16A4O15374 487 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 MAPTP10636 758 aaKnown RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 LMNB1P20700 586 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 GCLMP48507 274 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 VAMP7P51809 220 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 GTF2BQ00403 316 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 SAMD7Q7Z3H4 446 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 HES6Q96HZ4 224 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 ACCSQ96QU6 501 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 RMDN3Q96TC7 470 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 RPAP3Q9H6T3 665 aaPredicted RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 TMEM206Q9H813 350 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 PXMP2Q9NR77 195 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 TBC1D22BQ9NU19 505 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 HSPBP1Q9NZL4 362 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 SUCLA2Q9P2R7 463 aaPredicted RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 NCANO14594 1321 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 ITGA4P13612 1032 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 PEX3P56589 373 aa16.76■□□□□ 0.27
UPF3B-202ENST00000345865 ZNF280AP59817 542 aaPredicted RBP16.76■□□□□ 0.27
UPF3B-202ENST00000345865 KIF22Q14807 665 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms