RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RABGGTAQ92696 567 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RUNDC3BQ96NL0 473 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 NACA2Q9H009 215 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 IQCGQ9H095 443 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 POLR3FQ9H1D9 316 aaPredicted RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TUT1Q9H6E5 874 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 NXF1Q9UBU9 619 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 LRFN2Q9ULH4 789 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 OGTO15294 1046 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF189O75820 626 aaPredicted RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 ABCB4P21439 1286 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RTP1P59025 263 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RINT1Q6NUQ1 792 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RGMBQ6NW40 437 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 GPD1LQ8N335 351 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TNIP3Q96KP6 325 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 REEP2Q9BRK0 252 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 GOLPH3LQ9H4A5 285 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 CARNS1A5YM72 827 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 ZC3H11AO75152 810 aaKnown RBP eCLIP7.41□□□□□ -1.223e-8■■□□□ 13.8
SF3B1-201ENST00000335508 RNASELQ05823 741 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 EMC2Q15006 297 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 IQSEC1Q6DN90 963 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TOGARAM2Q6ZUX3 1019 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 CCDC91Q7Z6B0 441 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 CATSPER3Q86XQ3 398 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 ZFPM1Q8IX07 1006 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 NSMCE1Q8WV22 266 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 SREK1Q8WXA9 508 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TRIM62Q9BVG3 475 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 SNX25Q9H3E2 840 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RBAKQ9NYW8 714 aaPredicted RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 SHPRHQ149N8 1683 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 LRRC10BA6NIK2 292 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 OATP04181 439 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 VAMP7P51809 220 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 PPP1R7Q15435 360 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 GSTA5Q7RTV2 222 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 ANKRD13CQ8N6S4 541 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 MORC4Q8TE76 937 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 DNAJC12Q9UKB3 198 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TTC28Q96AY4 2481 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 ATP8B3O60423 1300 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 PRKCBP05771 671 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 SKIP12755 728 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 PIK3CAP42336 1068 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 ST3GAL1Q11201 340 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 BRD3Q15059 726 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 PCBP1Q15365 356 aaKnown RBP eCLIP7.4□□□□□ -1.22
SF3B1-201ENST00000335508 KRT222Q8N1A0 295 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 BANK1Q8NDB2 785 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 DHX38Q92620 1227 aaKnown RBP7.4□□□□□ -1.22
SF3B1-201ENST00000335508 PLCB1Q9NQ66 1216 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 ITIH6Q6UXX5 1313 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 TTC26A0AVF1 554 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 EIF3CLB5ME19 914 aaKnown RBP7.4□□□□□ -1.22
SF3B1-201ENST00000335508 GCLMP48507 274 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 CPT1AP50416 773 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 KIF11P52732 1056 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 DNAJC24Q6P3W2 148 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 BBS5Q8N3I7 341 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 TMC2Q8TDI7 906 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 PGBD4Q96DM1 585 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 EIF3CQ99613 913 aaKnown RBP7.4□□□□□ -1.22
SF3B1-201ENST00000335508 CYP3A7-CYP3A51PA0A087WV96 503 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 YDJCA8MPS7 323 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 KIAA0754O94854 1291 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 CALB1P05937 261 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 AKR1A1P14550 325 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 CYP3A7P24462 503 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 EIF4A3P38919 411 aaKnown RBP7.4□□□□□ -1.22
SF3B1-201ENST00000335508 LMAN1P49257 510 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 RBP5P82980 135 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 VGLL4Q14135 290 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 LGSNQ5TDP6 509 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 DAAM2Q86T65 1068 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 RNF34Q969K3 372 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF653Q96CK0 615 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 OPTNQ96CV9 577 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 TSNARE1Q96NA8 513 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 SLC38A7Q9NVC3 462 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 ASIC3Q9UHC3 531 aa7.4□□□□□ -1.22
SF3B1-201ENST00000335508 NAMPTP43490 491 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 SARNPP82979 210 aaKnown RBP7.4□□□□□ -1.23
SF3B1-201ENST00000335508 BFSP1Q12934 665 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 OR6J1Q8NGC5 347 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 SUCLA2Q9P2R7 463 aaPredicted RBP7.4□□□□□ -1.23
SF3B1-201ENST00000335508 STAP1Q9ULZ2 295 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 PCDHB2Q9Y5E7 798 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 EFCAB8A8MWE9 144 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 CABYRO75952 493 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 CLTAP09496 248 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 GJC1P36383 396 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 MTMR3Q13615 1198 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 GLB1LQ6UWU2 654 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF771Q7L3S4 317 aaPredicted RBP7.4□□□□□ -1.23
SF3B1-201ENST00000335508 ABRAQ8N0Z2 381 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.4□□□□□ -1.23
SF3B1-201ENST00000335508 CARD6Q9BX69 1037 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 PCIF1Q9H4Z3 704 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms