RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 EZRP15311 586 aaKnown RBP11.37□□□□□ -0.59
COL3A1-202ENST00000317840 HOXA10P31260 410 aaPredicted RBP11.37□□□□□ -0.59
COL3A1-202ENST00000317840 SHMT1P34896 483 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 CIAPIN1Q6FI81 312 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 PPM1KQ8N3J5 372 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 DYDC2Q96IM9 177 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 SEC16BQ96JE7 1060 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 SUCLA2Q9P2R7 463 aaPredicted RBP11.37□□□□□ -0.59
COL3A1-202ENST00000317840 PPP1R9AQ9ULJ8 1098 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 CLEC11AQ9Y240 323 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 ANKRD36CQ5JPF3 1778 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 BCORQ6W2J9 1755 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 K7ENM7 598 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CLTAP09496 248 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 HIBCHQ6NVY1 386 aaPredicted RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 OTUD6AQ7L8S5 288 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC197Q8NCU1 140 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 SCFD2Q8WU76 684 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 PIK3R5Q8WYR1 880 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 RAPGEF5Q92565 580 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TBC1D31Q96DN5 1066 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 THAP2Q9H0W7 228 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ASIC3Q9UHC3 531 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 MYH14Q7Z406 1995 aaKnown RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 COL4A1P02462 1669 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 PLCH1Q4KWH8 1693 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 DCDC2CA8MYV0 355 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 FAM86B1E9PN63 330 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ZBTB39O15060 712 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 FAM86B2P0C5J1 330 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 GJC1P36383 396 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ECE1P42892 770 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 FMO5P49326 533 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 COG2Q14746 738 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TNIP1Q15025 636 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TMEM132AQ24JP5 1023 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CRY2Q49AN0 593 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC38Q502W7 563 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ANKRD42Q8N9B4 389 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TCP11Q8WWU5 503 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC127Q96BQ5 260 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 FAM20AQ96MK3 541 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 SH2D3AQ9BRG2 576 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 DNAJC17Q9NVM6 304 aaKnown RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 DDX20Q9UHI6 824 aaKnown RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TRAF3IP3Q9Y228 551 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 MSH4O15457 936 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 GAP43P17677 238 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ADCY1Q08828 1119 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 EPHA7Q15375 998 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 SNCBQ16143 134 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 SYDE2Q5VT97 1194 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 SAMD7Q7Z3H4 446 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 TMC3Q7Z5M5 1100 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 NT5DC3Q86UY8 548 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 CD302Q8IX05 232 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 RTKN2Q8IZC4 609 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 PAIP2Q9BPZ3 127 aaKnown RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ELAC2Q9BQ52 826 aaKnown RBP11.36□□□□□ -0.59
COL3A1-202ENST00000317840 ZNF341Q9BYN7 854 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 HAUS2Q9NVX0 235 aa11.36□□□□□ -0.59
COL3A1-202ENST00000317840 LOC102724159A0A0B4J2E5 919 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CAND2O75155 1236 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CPP00450 1065 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FTLP02792 175 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 GCLMP48507 274 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 PMS2P54278 862 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 PWP2Q15269 919 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 PPP2R5EQ16537 467 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FAM133BQ5BKY9 247 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 APOBEC3HQ6NTF7 200 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 NSRP1Q9H0G5 558 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 AZI2Q9H6S1 392 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CHUKO15111 745 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 PLSCR1O15162 318 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 EDIL3O43854 480 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FGFR4P22455 802 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 GBP2P32456 591 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 EIF3BP55884 814 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 SNX1Q13596 522 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 UAP1Q16222 522 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FBXO25Q8TCJ0 367 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 ACER1Q8TDN7 264 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 CHMP6Q96FZ7 201 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FAM163AQ96GL9 167 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 STK33Q9BYT3 514 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 INTS2Q9H0H0 1204 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 MLXIPLQ9NP71 852 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 KCNMB3Q9NPA1 279 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 FZD1Q9UP38 647 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 NR2E1Q9Y466 385 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 DOT1LQ8TEK3 1739 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 EYA4O95677 639 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 MARSP56192 900 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 RINT1Q6NUQ1 792 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 TMEM179Q6ZVK1 233 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 SUGP1Q8IWZ8 645 aaKnown RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 ERP44Q9BS26 406 aa11.35□□□□□ -0.59
COL3A1-202ENST00000317840 ACTR5Q9H9F9 607 aaPredicted RBP11.35□□□□□ -0.59
COL3A1-202ENST00000317840 SLC40A1Q9NP59 571 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms