RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RPN1P04843 607 aaKnown RBP20.08■□□□□ 0.81
HMGA1-201ENST00000311487 CKBP12277 381 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 CYP2C18P33260 490 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 COASYQ13057 564 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 PTK7Q13308 1070 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 KANK3Q6NY19 840 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 SMYD4Q8IYR2 804 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-201ENST00000311487 C7orf61Q8IZ16 206 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 TMEM40Q8WWA1 233 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 SCLYQ96I15 445 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 PARVGQ9HBI0 331 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 SLC39A2Q9NP94 309 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 KCND2Q9NZV8 630 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 MROH7Q68CQ1 1323 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TRIM43BA6NCK2 446 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TLR3O15455 904 aaKnown RBP20.08■□□□□ 0.8
HMGA1-201ENST00000311487 GPR32O75388 356 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 SYN1P17600 705 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 NPTX2P47972 431 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TRIM71Q2Q1W2 868 aaKnown RBP20.08■□□□□ 0.8
HMGA1-201ENST00000311487 ZC2HC1CQ53FD0 456 aaPredicted RBP20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TAF2Q6P1X5 1199 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 LRSAM1Q6UWE0 723 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TCP11Q8WWU5 503 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 DPF3Q92784 378 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 KIFAP3Q92845 792 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 TRIM43Q96BQ3 446 aaPredicted RBP20.08■□□□□ 0.8
HMGA1-201ENST00000311487 DRC1Q96MC2 740 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 JPH2Q9BR39 696 aaPredicted RBP20.08■□□□□ 0.8
HMGA1-201ENST00000311487 IKZF4Q9H2S9 585 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 MINDY3Q9H8M7 445 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 MAPK8IP1Q9UQF2 711 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 CDY2AQ9Y6F7 541 aa20.08■□□□□ 0.8
HMGA1-201ENST00000311487 LOXHD1Q8IVV2 1947 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 CLTBP09497 229 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 PLS3P13797 630 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 GPC3P51654 580 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 CASP5P51878 434 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 C1orf53Q5VUE5 145 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 HIPK3Q9H422 1215 aa20.07■□□□□ 0.8
HMGA1-201ENST00000311487 MYH11P35749 1972 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 IQCF3P0C7M6 154 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 DMP1Q13316 513 aaPredicted RBP20.06■□□□□ 0.8
HMGA1-201ENST00000311487 SMARCE1Q969G3 411 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 IFT74Q96LB3 600 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 LRRC27Q9C0I9 530 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 ADAMTS10Q9H324 1103 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 MRPL44Q9H9J2 332 aaKnown RBP20.06■□□□□ 0.8
HMGA1-201ENST00000311487 IFT122Q9HBG6 1241 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 ODF2LQ9ULJ1 636 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 PPME1Q9Y570 386 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 MRPS6P82932 125 aaKnown RBP20.06■□□□□ 0.8
HMGA1-201ENST00000311487 CCDC65Q8IXS2 484 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 EXOC8Q8IYI6 725 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 TOX2Q96NM4 488 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 KMT5AQ9NQR1 393 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 HOOK1Q9UJC3 728 aaKnown RBP20.06■□□□□ 0.8
HMGA1-201ENST00000311487 GDAQ9Y2T3 454 aa20.06■□□□□ 0.8
HMGA1-201ENST00000311487 MYBP10242 640 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 KCNA1Q09470 495 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 STK4Q13043 487 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 MXD4Q14582 209 aaPredicted RBP20.05■□□□□ 0.8
HMGA1-201ENST00000311487 UNC13DQ70J99 1090 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 RSPH3Q86UC2 560 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 FAM178BQ8IXR5 827 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 CCDC34Q96HJ3 373 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 NOC4LQ9BVI4 516 aaKnown RBP20.05■□□□□ 0.8
HMGA1-201ENST00000311487 EXOC1Q9NV70 894 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 ALPK3Q96L96 1907 aa20.05■□□□□ 0.8
HMGA1-201ENST00000311487 K7ENM7 598 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 EVI5O60447 810 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 GHRP10912 638 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 ZNF131P52739 623 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 MBTPS1Q14703 1052 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 DEPTORQ8TB45 409 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 FIZ1Q96SL8 496 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 CELF4Q9BZC1 486 aaKnown RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 KIAA1468Q9P260 1216 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 LARSQ9P2J5 1176 aaKnown RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 MAN1B1Q9UKM7 699 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 ZMYND8Q9ULU4 1186 aaPredicted RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 RANBP2P49792 3224 aaKnown RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 FRMD3A2A2Y4 597 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 TTLL13PA6NNM8 815 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 INO80B-WBP1J3KQ70 363 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 GAS2O43903 313 aaKnown RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 GCNT3O95395 438 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 CCDC183Q5T5S1 534 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 UBE2Q2Q8WVN8 375 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 INO80BQ9C086 356 aaPredicted RBP20.04■□□□□ 0.8
HMGA1-201ENST00000311487 WNT8AQ9H1J5 351 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 RBSNQ9H1K0 784 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 TBX21Q9UL17 535 aa20.04■□□□□ 0.8
HMGA1-201ENST00000311487 M0QZ92 97 aa20.03■□□□□ 0.8
HMGA1-201ENST00000311487 TRAF7Q6Q0C0 670 aa20.03■□□□□ 0.8
HMGA1-201ENST00000311487 DEFB128Q7Z7B8 93 aa20.03■□□□□ 0.8
HMGA1-201ENST00000311487 CDR2LQ86X02 465 aaPredicted RBP20.03■□□□□ 0.8
HMGA1-201ENST00000311487 NME8Q8N427 588 aa20.03■□□□□ 0.8
HMGA1-201ENST00000311487 DENND3A2RUS2 1198 aa20.02■□□□□ 0.8
HMGA1-201ENST00000311487 PRPF6O94906 941 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms