RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 BZW1Q7L1Q6 419 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 RBM12Q9NTZ6 932 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 EXOC1Q9NV70 894 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 NID2Q14112 1375 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 LAD1O00515 517 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 ICAM1P05362 532 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 GNAT1P11488 350 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 CTCFP49711 727 aaPredicted RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 CCNA1P78396 465 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 PPATQ06203 517 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 MTMR3Q13615 1198 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 DAGLBQ8NCG7 672 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 PAPOLBQ9NRJ5 636 aaKnown RBP11.8□□□□□ -0.52
LSM3-201ENST00000306024 HOMER3Q9NSC5 361 aa11.8□□□□□ -0.52
LSM3-201ENST00000306024 CEP104O60308 925 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 LONP1P36776 959 aaKnown RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 HERVK_113P62684 666 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 ASIC1P78348 528 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 LAMB3Q13751 1172 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 SLC35G1Q2M3R5 365 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 MS4A14Q96JA4 679 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 ACAD9Q9H845 621 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 GOLGB1Q14789 3259 aaKnown RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 DNM1LO00429 736 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 CXCL11O14625 94 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 PAPOLAP51003 745 aaKnown RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 ELF3P78545 371 aaPredicted RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 BAATQ14032 418 aaPredicted RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 PTPROQ16827 1216 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 GGT7Q9UJ14 662 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 TSKSQ9UJT2 592 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 RASSF10A6NK89 507 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 KIAA1755Q5JYT7 1200 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 ARL6IP4Q66PJ3 421 aaKnown RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 SLFN12Q8IYM2 578 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 RNF10Q8N5U6 811 aaKnown RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 ZNF513Q8N8E2 541 aaPredicted RBP11.79□□□□□ -0.52
LSM3-201ENST00000306024 TBC1D5Q92609 795 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 CHMP6Q96FZ7 201 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 RWDD2AQ9UIY3 292 aa11.79□□□□□ -0.52
LSM3-201ENST00000306024 CCT8L1PA6NM43 557 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 FTCDO95954 541 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 ATP2C1P98194 919 aaPredicted RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 EHHADHQ08426 723 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 HAUS3Q68CZ6 603 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 RRAGAQ7L523 313 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 HOOK3Q86VS8 718 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 CCDC155Q8N6L0 562 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 TRIM7Q9C029 511 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 PCDHA13Q9Y5I0 950 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 SNCAIPQ9Y6H5 919 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 CFAP73A6NFT4 308 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 ZSCAN5CA6NGD5 496 aaPredicted RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 ZNF233A6NK53 670 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 SORBS3O60504 671 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 FAM153BP0C7A2 387 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 ZBED6P86452 979 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 BIRC3Q13489 604 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 FAM153CQ494X1 144 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 CHADLQ6NUI6 762 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 MGARPQ8TDB4 240 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 RUBCNQ92622 972 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 TUBGCP2Q9BSJ2 902 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 OSBPL7Q9BZF2 842 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 TMEM60Q9H2L4 133 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 SUDS3Q9H7L9 328 aaPredicted RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 INTS9Q9NV88 658 aaKnown RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 LIMA1Q9UHB6 759 aaKnown RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 FAM153AQ9UHL3 310 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 FBXO2Q9UK22 296 aaPredicted RBP11.78□□□□□ -0.52
LSM3-201ENST00000306024 VWA5AO00534 786 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 NFIBO00712 420 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 CETPP11597 493 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 DSG3P32926 999 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 CYP4A11Q02928 519 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 GRIK3Q13003 919 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 NLRX1Q86UT6 975 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 DPH5Q9H2P9 285 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 FBXO40Q9UH90 709 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 GDAQ9Y2T3 454 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 LAMA4Q16363 1823 aa11.78□□□□□ -0.52
LSM3-201ENST00000306024 TIAM2Q8IVF5 1701 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 TRIM49BA6NDI0 452 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 PPP1R11O60927 126 aaPredicted RBP11.77□□□□□ -0.52
LSM3-201ENST00000306024 MUM1Q2TAK8 710 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 EEPD1Q7L9B9 569 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 RAPGEF5Q92565 580 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 CAVIN3Q969G5 261 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 ZNF577Q9BSK1 485 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 AGPAT5Q9NUQ2 364 aa11.77□□□□□ -0.52
LSM3-201ENST00000306024 COL2A1P02458 1487 aaPredicted RBP11.77□□□□□ -0.52
LSM3-201ENST00000306024 LGALS16A8MUM7 142 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 RNF225M0QZC1 329 aaPredicted RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 KCNK3O14649 394 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 MMEP08473 750 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 ATP2A2P16615 1042 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 USP11P51784 963 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 RPS6P62753 249 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 SV2BQ7L1I2 683 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms