RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 PDE4DIPQ5VU43 2346 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 SMCO2A6NFE2 343 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 OR2W6PQ8NHA6 318 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 DDI1Q8WTU0 396 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 DBR1Q9UK59 544 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ADD1P35611 737 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TIMM10P62072 90 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 RBBP7Q16576 425 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 MDM1Q8TC05 714 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 GRAMD1AQ96CP6 724 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 GORASP1Q9BQQ3 440 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 PRG3Q9Y2Y8 225 aaPredicted RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 CCDC188H7C350 402 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 GUCY1B2O75343 617 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 LZTS2Q9BRK4 669 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 THAP9Q9H5L6 903 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ARHGEF3Q9NR81 526 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 C2CD2Q9Y426 696 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 CFAP99D6REC4 459 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ATP9AO75110 1047 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ENO3P13929 434 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 PUDPQ08623 228 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 BFSP2Q13515 415 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF658Q5TYW1 1059 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ARMC3Q5W041 872 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 STX19Q8N4C7 294 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 HEMGNQ9BXL5 484 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ZFYVE1Q9HBF4 777 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 PCDHGA3Q9Y5H0 932 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 KIF24Q5T7B8 1368 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 MAP3K5Q99683 1374 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 KIF14Q15058 1648 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 SLC39A14Q15043 492 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 APOL6Q9BWW8 343 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 HPS4Q9NQG7 708 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 TBKBP1A7MCY6 615 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 B2RBV5 119 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 CLPTM1O96005 669 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 DCTN2Q13561 401 aaKnown RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 KRR1Q13601 381 aaKnown RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 DNAL1Q4LDG9 190 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 CCDC60Q8IWA6 550 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 MBD2Q9UBB5 411 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM26FQ5R3K3 315 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 LPCAT2Q7L5N7 544 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 CLEC4FQ8N1N0 589 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 MYH15Q9Y2K3 1946 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 RFC5P40937 340 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ATAD3AQ9NVI7 634 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 WDR64B1ANS9 1081 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 SNX19Q92543 992 aa12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF594Q96JF6 807 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-201ENST00000296043 CIITAP33076 1130 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 SERPINB8P50452 374 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 ZBED8Q8IZ13 594 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 PARD3BQ8TEW8 1205 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 APPBP2Q92624 585 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 DEPDC7Q96QD5 511 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 IL1RL2Q9HB29 575 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 HSPBP1Q9NZL4 362 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 PLA2G4AP47712 749 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 KLHL38Q2WGJ6 581 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 MIEF2Q96C03 454 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 VPS50Q96JG6 964 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 PDLIM2Q96JY6 352 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 WWP1Q9H0M0 922 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 BTN3A3O00478 584 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 KRT38O76015 456 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 IL12RB1P42701 662 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF274Q96GC6 653 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 PAGE5Q96GU1 130 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 DMP1Q13316 513 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 MTF1Q14872 753 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 DDIASQ8IXT1 998 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 LINS1Q8NG48 757 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 RUBCNLQ9H714 662 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 VIPAS39Q9H9C1 493 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 DMRT2Q9Y5R5 561 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 ATP6V1G2O95670 118 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 IMPDH2P12268 514 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM47AQ5JRC9 791 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 FOXR1Q6PIV2 292 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 MB21D1Q8N884 522 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 EDC3Q96F86 508 aaKnown RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 SPRTNQ9H040 489 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 POLR1AO95602 1720 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 SNF8Q96H20 258 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 SMARCAL1Q9NZC9 954 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 C15orf41Q9Y2V0 281 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 RASSF9O75901 435 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 LRIG3Q6UXM1 1119 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 STKLD1Q8NE28 680 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 ATXN7L3BQ96GX2 97 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 UBE2OQ9C0C9 1292 aaKnown RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 P4HA2O15460 535 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 CACNB1Q02641 598 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 POTEAQ6S8J7 498 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 RUBCNQ92622 972 aa12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 C6orf62Q9GZU0 229 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-201ENST00000296043 C20orf96Q9NUD7 363 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms