RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TBXAS1P24557 533 aaPredicted RBP17.97■□□□□ 0.47
PHRF1-201ENST00000264555 PLAAQ9Y263 795 aa17.97■□□□□ 0.47
PHRF1-201ENST00000264555 NUB1Q9Y5A7 615 aa17.97■□□□□ 0.47
PHRF1-201ENST00000264555 LIG3P49916 1009 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 DYNLT1P63172 113 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 PKN1Q16512 942 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.96■□□□□ 0.476e-7■■■■□ 23.8
PHRF1-201ENST00000264555 PFASO15067 1338 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 CTNND1O60716 968 aaKnown RBP17.96■□□□□ 0.47
PHRF1-201ENST00000264555 ZBTB7AO95365 584 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 TRIP13Q15645 432 aaPredicted RBP17.96■□□□□ 0.47
PHRF1-201ENST00000264555 ARHGEF18Q6ZSZ5 1173 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 PSPC1Q8WXF1 523 aaKnown RBP17.96■□□□□ 0.47
PHRF1-201ENST00000264555 SAAL1Q96ER3 474 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 BAIAP2L1Q9UHR4 511 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 SPATA4Q8NEY3 305 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 FAM149B1Q96BN6 582 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 UBR1Q8IWV7 1749 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 PRPSAP2O60256 369 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 ADCY2Q08462 1091 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 GPD1LQ8N335 351 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 ZNF564Q8TBZ8 553 aaPredicted RBP17.96■□□□□ 0.47
PHRF1-201ENST00000264555 PPP4R1Q8TF05 950 aa17.96■□□□□ 0.47
PHRF1-201ENST00000264555 RAB3IPQ96QF0 476 aaPredicted RBP17.96■□□□□ 0.47
PHRF1-201ENST00000264555 ZRANB2O95218 330 aaKnown RBP eCLIP17.95■□□□□ 0.463e-6■■■■□ 25.7
PHRF1-201ENST00000264555 TMEM270Q6UE05 265 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SLC9A2Q9UBY0 812 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SYNJ2BP-COX16A0A087WUM0 186 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 TJP3O95049 919 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 MTMR2Q13614 643 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SMC1BQ8NDV3 1235 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 FBXL13Q8NEE6 735 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 COX16Q9P0S2 106 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SLCO1A2P46721 670 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 TNFAIP2Q03169 654 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SDCCAG8Q86SQ7 713 aaPredicted RBP17.95■□□□□ 0.46
PHRF1-201ENST00000264555 C7orf31Q8N865 590 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 RUBCNQ92622 972 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 RBM41Q96IZ5 413 aaKnown RBP17.95■□□□□ 0.46
PHRF1-201ENST00000264555 SNX24Q9Y343 169 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 IFT88Q13099 833 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 DARS2Q6PI48 645 aaKnown RBP17.95■□□□□ 0.46
PHRF1-201ENST00000264555 NUP85Q9BW27 656 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 NBPF3Q9H094 633 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 C2orf40Q9H1Z8 148 aa17.95■□□□□ 0.46
PHRF1-201ENST00000264555 GGCXP38435 758 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 ERGIC2Q96RQ1 377 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 STK33Q9BYT3 514 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 RRP15Q9Y3B9 282 aaKnown RBP17.94■□□□□ 0.46
PHRF1-201ENST00000264555 CALB1P05937 261 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 UCHL3P15374 230 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 KIF1AQ12756 1690 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 KIF22Q14807 665 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 C3orf67Q6ZVT6 689 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 JPH1Q9HDC5 661 aaPredicted RBP17.94■□□□□ 0.46
PHRF1-201ENST00000264555 IL1R1P14778 569 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 CD44P16070 742 aaKnown RBP17.94■□□□□ 0.46
PHRF1-201ENST00000264555 RIT2Q99578 217 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 SLITRK6Q9H5Y7 841 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 SLC37A4O43826 429 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 MYBL1P10243 752 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 PSMA2P25787 234 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 PHKA2P46019 1235 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 COG2Q14746 738 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 PPP1R16BQ96T49 567 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 AGPAT1Q99943 283 aa17.94■□□□□ 0.46
PHRF1-201ENST00000264555 PACSIN2Q9UNF0 486 aaPredicted RBP17.94■□□□□ 0.46
PHRF1-201ENST00000264555 ARL4AP40617 200 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 MSH2P43246 934 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 HMGCS2P54868 508 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZNF699Q32M78 642 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 SLC38A10Q9HBR0 1119 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 STK38LQ9Y2H1 464 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZBTB12Q9Y330 459 aaPredicted RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 CTIFO43310 598 aaKnown RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 MYBP10242 640 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 PCK1P35558 622 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 BASP1P80723 227 aaKnown RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 WNT8AQ9H1J5 351 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 PSMD14O00487 310 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 GIPC1O14908 333 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 EIF3DO15371 548 aaKnown RBP eCLIP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 CHRNA3P32297 505 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 GRB10Q13322 594 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 TMED2Q15363 201 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 GSPT2Q8IYD1 628 aaKnown RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ANKRD7Q92527 254 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 TAF1DQ9H5J8 278 aaPredicted RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 KBTBD4Q9NVX7 518 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 APEX2Q9UBZ4 518 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 UBE4BO95155 1302 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 A0A1B0GUA9 196 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 GARSP41250 739 aaKnown RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 FMO5P49326 533 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZNF568Q3ZCX4 644 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZNF394Q53GI3 561 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZNF746Q6NUN9 644 aaPredicted RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ILDR1Q86SU0 546 aaPredicted RBP17.93■□□□□ 0.46
PHRF1-201ENST00000264555 ZDHHC15Q96MV8 337 aa17.93■□□□□ 0.46
PHRF1-201ENST00000264555 FAM193BQ96PV7 902 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms