RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 VWA5AO00534 786 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 CEP104O60308 925 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 SRGAP2CP0DJJ0 459 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 GUCY1A2P33402 732 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 GTF2F1P35269 517 aaKnown RBP eCLIP14.73□□□□□ -0.05
LDLR-201ENST00000252444 NAMPTP43490 491 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 ZNF699Q32M78 642 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 KCNH7Q9NS40 1196 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 NHSQ6T4R5 1651 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 ETF1P62495 437 aaKnown RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 HERVK_113P62684 666 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 COG7P83436 770 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 NBPF9Q3BBW0 867 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 ADSSL1Q8N142 457 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 SYN2Q92777 582 aaPredicted RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 ACAP3Q96P50 834 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 FAM198AQ9UFP1 575 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 CASZ1Q86V15 1759 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 ANO9A1A5B4 782 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 POTEFA5A3E0 1075 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 FOXP2O15409 715 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 POTEIP0CG38 1075 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 GUCY2CP25092 1073 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 PRKCEQ02156 737 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 NTRK3Q16288 839 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 KIAA1841Q6NSI8 718 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 POTEGQ6S5H5 508 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 POTEEQ6S8J3 1075 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 CATSPERGQ6ZRH7 1159 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 EEPD1Q7L9B9 569 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 TTC13Q8NBP0 860 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 GLTPD2A6NH11 291 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 PPP2R5CQ13362 524 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 BFSP2Q13515 415 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 FOXR2Q6PJQ5 311 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 PPP1R14CQ8TAE6 165 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 UBE2TQ9NPD8 197 aaPredicted RBP14.72□□□□□ -0.05
LDLR-201ENST00000252444 PASKQ96RG2 1323 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 C17orf102A2RUQ5 167 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 STAG3L1P0CL83 205 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 PTPRAP18433 802 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 RAB27AP51159 221 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 MTA1Q13330 715 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 LONRF2Q1L5Z9 754 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 TAF3Q5VWG9 929 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 IQSEC1Q6DN90 963 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 NT5DC4Q86YG4 428 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 DDX50Q9BQ39 737 aaKnown RBP14.72□□□□□ -0.05
LDLR-201ENST00000252444 FAM114A2Q9NRY5 505 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 CASP14P31944 242 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 ELF1P32519 619 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 NBPF12Q5TAG4 269 aaPredicted RBP14.72□□□□□ -0.05
LDLR-201ENST00000252444 KRT222Q8N1A0 295 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 RNF169Q8NCN4 708 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 RSAD2Q8WXG1 361 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 GOLPH3LQ9H4A5 285 aa14.72□□□□□ -0.05
LDLR-201ENST00000252444 ATRNL1Q5VV63 1379 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 GARTP22102 1010 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 RBP5P82980 135 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 MKRN3Q13064 507 aaKnown RBP14.71□□□□□ -0.05
LDLR-201ENST00000252444 TWF2Q6IBS0 349 aaKnown RBP14.71□□□□□ -0.05
LDLR-201ENST00000252444 PIGOQ8TEQ8 1089 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 EXTL3O43909 919 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 LRMPQ12912 555 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 FBXL13Q8NEE6 735 aa14.71□□□□□ -0.05
LDLR-201ENST00000252444 RBM41Q96IZ5 413 aaKnown RBP14.71□□□□□ -0.05
LDLR-201ENST00000252444 CYP3A7-CYP3A51PA0A087WV96 503 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 SLC16A4O15374 487 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 CYP3A7P24462 503 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 PRCPP42785 496 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 LRRC41Q15345 812 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 RHPN2Q8IUC4 686 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 ZNF653Q96CK0 615 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 SLC38A10Q9HBR0 1119 aa14.71□□□□□ -0.06
LDLR-201ENST00000252444 AGO4Q9HCK5 861 aaKnown RBP14.71□□□□□ -0.06
LDLR-201ENST00000252444 ARL4AP40617 200 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SLC5A5Q92911 643 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 PPP1R2P1Q96PQ5 205 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 COL18A1P39060 1754 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 EFCAB8A8MWE9 144 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 E2F5Q15329 346 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 NOTUMQ6P988 496 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SENP7Q9BQF6 1050 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 ERCC3P19447 782 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 RBL2Q08999 1139 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 CYFIP1Q7L576 1253 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SYTL5Q8TDW5 730 aaPredicted RBP14.7□□□□□ -0.06
LDLR-201ENST00000252444 INTS2Q9H0H0 1204 aaKnown RBP14.7□□□□□ -0.06
LDLR-201ENST00000252444 ABHD16BQ9H3Z7 469 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 DDX56Q9NY93 547 aaKnown RBP14.7□□□□□ -0.06
LDLR-201ENST00000252444 RBAKQ9NYW8 714 aaPredicted RBP14.7□□□□□ -0.06
LDLR-201ENST00000252444 RGPD5Q99666 1765 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 GPR182O15218 404 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 CLIC2O15247 247 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 MSH4O15457 936 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SNX17Q15036 470 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SKIDA1Q1XH10 827 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 SV2CQ496J9 727 aa14.7□□□□□ -0.06
LDLR-201ENST00000252444 FTOQ9C0B1 505 aaKnown RBP eCLIP14.7□□□□□ -0.06
LDLR-201ENST00000252444 MARK3P27448 753 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms