RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS4B-201ENST00000238497 GRXCR1A8MXD5 290 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 IBSPP21815 317 aaPredicted RBP9.52□□□□□ -0.89
VPS4B-201ENST00000238497 GRB10Q13322 594 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 MTMR1Q13613 665 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 CTTNQ14247 550 aaKnown RBP9.52□□□□□ -0.89
VPS4B-201ENST00000238497 MFSD10Q14728 455 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 ECM1Q16610 540 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 CCP110O43303 1012 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 STX10O60499 249 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 PPFIA4O75335 1185 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 FGBP02675 491 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 TERF1P54274 439 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 ARHGAP4P98171 946 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 ZNF200P98182 395 aaPredicted RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 SPAG1Q07617 926 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 ZNF697Q5TEC3 545 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 CNNM4Q6P4Q7 775 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 NYAP1Q6ZVC0 841 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 ADSSL1Q8N142 457 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 SAMD3Q8N6K7 520 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 MMTAG2Q9BU76 263 aaKnown RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 KATNAL1Q9BW62 490 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 PLEKHA4Q9H4M7 779 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 PANK4Q9NVE7 773 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 NID2Q14112 1375 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 H3BRB1 525 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 ZBTB39O15060 712 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 TGFB3P10600 412 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 MATR3P43243 847 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 IGBP1P78318 339 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 LRIT3Q3SXY7 679 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 CNGA4Q8IV77 575 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 PPTC7Q8NI37 304 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 CCSER1Q9C0I3 900 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 TUT1Q9H6E5 874 aaKnown RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 RIC8AQ9NPQ8 531 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 CTSHP09668 335 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 RHOXF2BP0C7M4 288 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 APBA1Q02410 837 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 BFSP2Q13515 415 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 DCAF17Q5H9S7 520 aaPredicted RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 GDF6Q6KF10 455 aaPredicted RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 REXO1L1PQ8IX06 675 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 RPUSD2Q8IZ73 545 aaKnown RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 SPATA20Q8TB22 786 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 CCDC43Q96MW1 224 aaKnown RBP9.51□□□□□ -0.89
VPS4B-201ENST00000238497 RHOXF2Q9BQY4 288 aa9.51□□□□□ -0.89
VPS4B-201ENST00000238497 FRMPD3Q5JV73 1810 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 M0R2N6 131 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 BACH1O14867 736 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 CLIC2O15247 247 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 MFAP3LO75121 409 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 MRPS25P82663 173 aaKnown RBP9.5□□□□□ -0.89
VPS4B-201ENST00000238497 PCNX4Q63HM2 1172 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 FAM117BQ6P1L5 589 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 NFRKBQ6P4R8 1299 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 PSRC1Q6PGN9 363 aaPredicted RBP9.5□□□□□ -0.89
VPS4B-201ENST00000238497 RRAGAQ7L523 313 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 INPP4AQ96PE3 977 aaPredicted RBP9.5□□□□□ -0.89
VPS4B-201ENST00000238497 BHMT2Q9H2M3 363 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 KBTBD4Q9NVX7 518 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 KIF2AO00139 706 aaPredicted RBP9.5□□□□□ -0.89
VPS4B-201ENST00000238497 AKR1B10O60218 316 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 ATP9AO75110 1047 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 CD4P01730 458 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 CCDC122Q5T0U0 273 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 FAM109BQ6ICB4 259 aaPredicted RBP9.5□□□□□ -0.89
VPS4B-201ENST00000238497 METTL7BQ6UX53 244 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 KSR1Q8IVT5 923 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 SLC35F6Q8N357 371 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 PPM1EQ8WY54 764 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 KAT2BQ92831 832 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 ATP6V0A1Q93050 837 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 CDHR1Q96JP9 859 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 AK8Q96MA6 479 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 PNMA5Q96PV4 448 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 TSG101Q99816 390 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 MAF1Q9H063 256 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 IL23AQ9NPF7 189 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 COL6A3P12111 3177 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 TTC28Q96AY4 2481 aa9.5□□□□□ -0.89
VPS4B-201ENST00000238497 LAD1O00515 517 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 KLRC4O43908 158 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 PRPF6O94906 941 aaKnown RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 LGALS2P05162 132 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 PLA2G4BP0C869 781 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 ITGB5P18084 799 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 CCNE1P24864 410 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 THPOP40225 353 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 FAM26FQ5R3K3 315 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 TMEM240Q5SV17 173 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 KIAA0895Q8NCT3 520 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 HAS1Q92839 578 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 BLOC1S4Q9NUP1 217 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 SETD4Q9NVD3 440 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 CXXC1Q9P0U4 656 aaPredicted RBP9.49□□□□□ -0.89
VPS4B-201ENST00000238497 TELO2Q9Y4R8 837 aa9.49□□□□□ -0.89
VPS4B-201ENST00000238497 PCDHB13Q9Y5F0 798 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms