RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC61	YLR378C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	11.45	□□□□□ -0.58	not detected
SEC61	YLR378C	IMH1	Q06704	911 aa	Known RBP	11.45	□□□□□ -0.58
SEC61	YLR378C	RRT14	P40470	206 aa		11.44	□□□□□ -0.58
SEC61	YLR378C	YFR016C	P43597	1233 aa	Known RBP	11.43	□□□□□ -0.58
SEC61	YLR378C	KCC4	P25389	1037 aa		11.43	□□□□□ -0.58
SEC61	YLR378C	NSE3	Q05541	303 aa		11.43	□□□□□ -0.58
SEC61	YLR378C	UGA3	P26370	528 aa		11.42	□□□□□ -0.58
SEC61	YLR378C	YKL133C	P36066	463 aa		11.42	□□□□□ -0.58
SEC61	YLR378C	YRF1-3	P0CX14	1859 aa		11.41	□□□□□ -0.58
SEC61	YLR378C	YRF1-7	P0CX15	1859 aa		11.41	□□□□□ -0.58
SEC61	YLR378C	YRF1-6	P53819	1859 aa		11.41	□□□□□ -0.58
SEC61	YLR378C	DAL5	P15365	543 aa		11.41	□□□□□ -0.58
SEC61	YLR378C	EDE1	P34216	1381 aa		11.4	□□□□□ -0.58
SEC61	YLR378C	YIL092W	P40497	633 aa		11.4	□□□□□ -0.58
SEC61	YLR378C	INP54	Q08227	384 aa	Known RBP	11.4	□□□□□ -0.58
SEC61	YLR378C	NUP145	P49687	1317 aa		11.39	□□□□□ -0.59
SEC61	YLR378C	BMS1	Q08965	1183 aa	Known RBP	11.39	□□□□□ -0.59
SEC61	YLR378C	ROM2	P51862	1356 aa	Known RBP	11.38	□□□□□ -0.59
SEC61	YLR378C	YBR287W	P38355	427 aa		11.38	□□□□□ -0.59
SEC61	YLR378C	ATG13	Q06628	738 aa		11.38	□□□□□ -0.59
SEC61	YLR378C	AVT3	P36062	692 aa		11.36	□□□□□ -0.59
SEC61	YLR378C	SRT1	Q03175	343 aa		11.36	□□□□□ -0.59
SEC61	YLR378C	OSM1	P21375	501 aa	Known RBP	11.35	□□□□□ -0.59
SEC61	YLR378C	ADE16	P54113	591 aa	Known RBP	11.35	□□□□□ -0.59
SEC61	YLR378C	COQ4	O13525	335 aa		11.35	□□□□□ -0.59
SEC61	YLR378C	FRK1	Q03002	865 aa	Predicted RBP	11.34	□□□□□ -0.59
SEC61	YLR378C	LYS2	P07702	1392 aa		11.33	□□□□□ -0.6
SEC61	YLR378C	YIL055C	P40523	627 aa	Known RBP	11.33	□□□□□ -0.6
SEC61	YLR378C	YBP2	P53169	641 aa		11.32	□□□□□ -0.6
SEC61	YLR378C	YPP1	P46951	817 aa		11.31	□□□□□ -0.6
SEC61	YLR378C	DOT5	P40553	215 aa		11.3	□□□□□ -0.6
SEC61	YLR378C	POL32	P47110	350 aa		11.3	□□□□□ -0.6
SEC61	YLR378C	YOL057W	Q08225	711 aa		11.3	□□□□□ -0.6
SEC61	YLR378C	NOP8	Q08287	484 aa	Predicted RBP	11.3	□□□□□ -0.6
SEC61	YLR378C	ALE1	Q08548	619 aa		11.3	□□□□□ -0.6
SEC61	YLR378C	RAD4	P14736	754 aa		11.29	□□□□□ -0.6
SEC61	YLR378C	RMT2	Q03305	412 aa		11.29	□□□□□ -0.6
SEC61	YLR378C	COB	P00163	385 aa		11.28	□□□□□ -0.6
SEC61	YLR378C	PUF6	Q04373	656 aa	Known RBP	11.28	□□□□□ -0.6
SEC61	YLR378C	LAM6	Q08001	693 aa		11.28	□□□□□ -0.6
SEC61	YLR378C	FOX2	Q02207	900 aa	Known RBP	11.27	□□□□□ -0.6
SEC61	YLR378C	TRP5	P00931	707 aa	Known RBP	11.26	□□□□□ -0.61
SEC61	YLR378C	CSI1	Q04368	295 aa		11.26	□□□□□ -0.61
SEC61	YLR378C	DIP2	Q12220	943 aa	Predicted RBP	11.26	□□□□□ -0.61
SEC61	YLR378C	MRP7	P12687	371 aa		11.25	□□□□□ -0.61
SEC61	YLR378C	GRX1	P25373	110 aa	Known RBP	11.25	□□□□□ -0.61
SEC61	YLR378C	YJL181W	P46987	611 aa		11.25	□□□□□ -0.61
SEC61	YLR378C	PRP40	P33203	583 aa	Known RBP	11.24	□□□□□ -0.61
SEC61	YLR378C	DNM1	P54861	757 aa		11.24	□□□□□ -0.61
SEC61	YLR378C	YNG2	P38806	282 aa	Known RBP	11.23	□□□□□ -0.61
SEC61	YLR378C	NOP53	Q12080	455 aa	Known RBP	11.23	□□□□□ -0.61
SEC61	YLR378C	RIM15	P43565	1770 aa		11.22	□□□□□ -0.61
SEC61	YLR378C	RPS19A	P07280	144 aa	Known RBP	11.22	□□□□□ -0.61
SEC61	YLR378C	RPS19B	P07281	144 aa	Predicted RBP	11.22	□□□□□ -0.61
SEC61	YLR378C	RPC31	P17890	251 aa		11.22	□□□□□ -0.61
SEC61	YLR378C	MDG1	P53885	366 aa		11.22	□□□□□ -0.61
SEC61	YLR378C	SSP2	Q08646	371 aa		11.22	□□□□□ -0.61
SEC61	YLR378C	YKR075C	P36155	307 aa		11.21	□□□□□ -0.61
SEC61	YLR378C	YDR306C	Q06640	478 aa		11.21	□□□□□ -0.61
SEC61	YLR378C	CST6	P40535	587 aa		11.19	□□□□□ -0.62
SEC61	YLR378C	RPN11	P43588	306 aa	Known RBP	11.19	□□□□□ -0.62
SEC61	YLR378C	ZDS2	P54786	942 aa		11.19	□□□□□ -0.62
SEC61	YLR378C	YMR074C	Q04773	145 aa		11.19	□□□□□ -0.62
SEC61	YLR378C	RAD24	P32641	659 aa		11.18	□□□□□ -0.62
SEC61	YLR378C	VPS64	Q03944	604 aa		11.18	□□□□□ -0.62
SEC61	YLR378C	ECM16	Q04217	1267 aa	Known RBP	11.18	□□□□□ -0.62
SEC61	YLR378C	TUM1	Q08686	304 aa	Known RBP	11.18	□□□□□ -0.62
SEC61	YLR378C	YGR122W	P53272	402 aa		11.18	□□□□□ -0.62
SEC61	YLR378C	SPO1	P53541	631 aa		11.18	□□□□□ -0.62
SEC61	YLR378C	UBP1	P25037	809 aa		11.17	□□□□□ -0.62
SEC61	YLR378C	NUP133	P36161	1157 aa		11.17	□□□□□ -0.62
SEC61	YLR378C	PHM7	Q12252	991 aa		11.17	□□□□□ -0.62
SEC61	YLR378C	HGH1	P48362	394 aa	Known RBP	11.16	□□□□□ -0.62
SEC61	YLR378C	MSB4	Q12317	492 aa		11.16	□□□□□ -0.62
SEC61	YLR378C	YJR008W	P47085	338 aa		11.15	□□□□□ -0.62
SEC61	YLR378C	SWI1	P09547	1314 aa		11.14	□□□□□ -0.63
SEC61	YLR378C	BOI2	P39969	1040 aa		11.14	□□□□□ -0.63
SEC61	YLR378C	NMD2	P38798	1089 aa	Known RBP	11.13	□□□□□ -0.63
SEC61	YLR378C	SWC3	P31376	625 aa		11.12	□□□□□ -0.63
SEC61	YLR378C	GLN1	P32288	370 aa	Known RBP	11.12	□□□□□ -0.63
SEC61	YLR378C	APL2	P36000	726 aa	Predicted RBP	11.12	□□□□□ -0.63
SEC61	YLR378C	GRE2	Q12068	342 aa	Known RBP	11.11	□□□□□ -0.63
SEC61	YLR378C	GCD7	P32502	381 aa	Predicted RBP	11.1	□□□□□ -0.63
SEC61	YLR378C	SER1	P33330	395 aa	Known RBP	11.1	□□□□□ -0.63
SEC61	YLR378C	ILV3	P39522	585 aa	Known RBP	11.1	□□□□□ -0.63
SEC61	YLR378C	TEA1	P47988	759 aa		11.1	□□□□□ -0.63
SEC61	YLR378C	PKH1	Q03407	766 aa		11.1	□□□□□ -0.63
SEC61	YLR378C	YPR204W	Q08995	1032 aa		11.1	□□□□□ -0.63
SEC61	YLR378C	NPR2	P39923	615 aa		11.09	□□□□□ -0.63
SEC61	YLR378C	YLR271W	Q06152	274 aa		11.09	□□□□□ -0.63
SEC61	YLR378C	SUP35	P05453	685 aa	Known RBP	11.09	□□□□□ -0.63
SEC61	YLR378C	LPD1	P09624	499 aa	Known RBP	11.09	□□□□□ -0.63
SEC61	YLR378C	RFC1	P38630	861 aa	Known RBP	11.09	□□□□□ -0.63
SEC61	YLR378C	UBP12	P39538	1254 aa		11.09	□□□□□ -0.63
SEC61	YLR378C	ARG8	P18544	423 aa		11.08	□□□□□ -0.64
SEC61	YLR378C	YGL082W	P53155	381 aa		11.08	□□□□□ -0.64
SEC61	YLR378C	SET1	P38827	1080 aa	Known RBP	11.07	□□□□□ -0.64
SEC61	YLR378C	NKP2	Q06162	153 aa		11.07	□□□□□ -0.64
SEC61	YLR378C	BUG1	Q12191	341 aa		11.07	□□□□□ -0.64
SEC61	YLR378C	NCB2	Q92317	146 aa		11.07	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms