RNA–Protein interactions for RNA: YGR074W

SMD1, Transcript of Core Sm protein Sm D1, yeast

Gene SMD1, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMD1	YGR074W	SLY41	P22215	453 aa		4.25	□□□□□ -1.73
SMD1	YGR074W	IES2	P40154	320 aa		4.25	□□□□□ -1.73
SMD1	YGR074W	NIS1	P53939	407 aa		4.25	□□□□□ -1.73
SMD1	YGR074W	YMR196W	Q04336	1088 aa		4.25	□□□□□ -1.73
SMD1	YGR074W	ARG82	P07250	355 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	DSF2	P38213	736 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	LEO1	P38439	464 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	YFL066C	P43538	392 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	TBF1	Q02457	562 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	ALR1	Q08269	859 aa		4.24	□□□□□ -1.73
SMD1	YGR074W	IXR1	P33417	597 aa		4.23	□□□□□ -1.73
SMD1	YGR074W	OSH7	P38755	437 aa		4.23	□□□□□ -1.73
SMD1	YGR074W	PUS6	P53294	404 aa		4.23	□□□□□ -1.73
SMD1	YGR074W	AAD14	P42884	376 aa		4.22	□□□□□ -1.73
SMD1	YGR074W	RPA14	P50106	137 aa		4.22	□□□□□ -1.73
SMD1	YGR074W	SPB4	P25808	606 aa	Predicted RBP	4.21	□□□□□ -1.74
SMD1	YGR074W	YJR098C	P47139	656 aa		4.21	□□□□□ -1.74
SMD1	YGR074W	NUP42	P49686	430 aa	Known RBP	4.21	□□□□□ -1.74
SMD1	YGR074W	FPK1	P53739	893 aa		4.21	□□□□□ -1.74
SMD1	YGR074W	YPR097W	Q06839	1073 aa		4.21	□□□□□ -1.74
SMD1	YGR074W	TCB1	Q12466	1186 aa		4.21	□□□□□ -1.74
SMD1	YGR074W	YDL206W	Q12424	762 aa		4.2	□□□□□ -1.74
SMD1	YGR074W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
SMD1	YGR074W	TAF7	Q05021	590 aa		4.19	□□□□□ -1.74
SMD1	YGR074W	SAS10	Q12136	610 aa	Predicted RBP	4.19	□□□□□ -1.74
SMD1	YGR074W	SKN7	P38889	622 aa		4.18	□□□□□ -1.74
SMD1	YGR074W	DIT2	P21595	489 aa		4.17	□□□□□ -1.74
SMD1	YGR074W	LEU3	P08638	886 aa		4.15	□□□□□ -1.75
SMD1	YGR074W	TRM1	P15565	570 aa	Known RBP	4.15	□□□□□ -1.75
SMD1	YGR074W	DLD1	P32891	587 aa		4.15	□□□□□ -1.75
SMD1	YGR074W	HST2	P53686	357 aa		4.15	□□□□□ -1.75
SMD1	YGR074W	MMP1	Q12372	583 aa		4.15	□□□□□ -1.75
SMD1	YGR074W	SCJ1	P25303	377 aa		4.14	□□□□□ -1.75
SMD1	YGR074W	GLN1	P32288	370 aa	Known RBP	4.13	□□□□□ -1.75
SMD1	YGR074W	ATF2	P53296	535 aa		4.13	□□□□□ -1.75
SMD1	YGR074W	YMR187C	Q03236	431 aa		4.13	□□□□□ -1.75
SMD1	YGR074W	IRC24	P40580	263 aa		4.12	□□□□□ -1.75
SMD1	YGR074W	VAC17	P25591	423 aa		4.11	□□□□□ -1.75
SMD1	YGR074W	YBL086C	P38177	466 aa		4.1	□□□□□ -1.75
SMD1	YGR074W	TDA6	Q06466	467 aa		4.1	□□□□□ -1.75
SMD1	YGR074W	ADE12	P80210	433 aa	Known RBP	4.09	□□□□□ -1.75
SMD1	YGR074W	ESS1	P22696	170 aa		4.08	□□□□□ -1.76
SMD1	YGR074W	MAC1	P35192	417 aa		4.08	□□□□□ -1.76
SMD1	YGR074W	RPN1	P38764	993 aa	Known RBP	4.08	□□□□□ -1.76
SMD1	YGR074W	CEM1	P39525	442 aa		4.07	□□□□□ -1.76
SMD1	YGR074W	APP1	P53933	587 aa		4.07	□□□□□ -1.76
SMD1	YGR074W	NAM8	Q00539	523 aa	Known RBP	4.07	□□□□□ -1.76
SMD1	YGR074W	CDC19	P00549	500 aa	Known RBP	4.06	□□□□□ -1.76
SMD1	YGR074W	EMW1	P42842	904 aa	Known RBP	4.06	□□□□□ -1.76
SMD1	YGR074W	CUZ1	P53899	274 aa		4.05	□□□□□ -1.76
SMD1	YGR074W	YJU3	P28321	313 aa		4.04	□□□□□ -1.76
SMD1	YGR074W	SBE2	P42223	864 aa	Known RBP	4.04	□□□□□ -1.76
SMD1	YGR074W	ARG8	P18544	423 aa		4.03	□□□□□ -1.76
SMD1	YGR074W	MKS1	P34072	584 aa		4.03	□□□□□ -1.76
SMD1	YGR074W	MCX1	P38323	520 aa	Predicted RBP	4.03	□□□□□ -1.76
SMD1	YGR074W	RSC30	P38781	883 aa		4.03	□□□□□ -1.76
SMD1	YGR074W	YPL034W	Q03083	165 aa		4.03	□□□□□ -1.76
SMD1	YGR074W	BDS1	Q08347	646 aa		4.03	□□□□□ -1.76
SMD1	YGR074W	PKH3	Q03306	898 aa	Predicted RBP	4.02	□□□□□ -1.77
SMD1	YGR074W	ITT1	Q04638	464 aa		4.02	□□□□□ -1.77
SMD1	YGR074W	GLT1	Q12680	2145 aa	Known RBP	4.01	□□□□□ -1.77
SMD1	YGR074W	AMN1	P38285	549 aa	Predicted RBP	4.01	□□□□□ -1.77
SMD1	YGR074W	DFG5	Q05031	458 aa		4.01	□□□□□ -1.77
SMD1	YGR074W	VTC4	P47075	721 aa		4	□□□□□ -1.77
SMD1	YGR074W	YNR021W	P53723	404 aa	Known RBP	4	□□□□□ -1.77
SMD1	YGR074W	FIG4	P42837	879 aa		3.99	□□□□□ -1.77
SMD1	YGR074W	YNR014W	P53719	212 aa		3.99	□□□□□ -1.77
SMD1	YGR074W	YCK2	P23292	546 aa	Known RBP	3.98	□□□□□ -1.77
SMD1	YGR074W	GLC3	P32775	704 aa		3.98	□□□□□ -1.77
SMD1	YGR074W	RPP2B	P02400	110 aa	Known RBP	3.97	□□□□□ -1.77
SMD1	YGR074W	TEC1	P18412	486 aa		3.97	□□□□□ -1.77
SMD1	YGR074W	FBP26	P32604	452 aa		3.97	□□□□□ -1.77
SMD1	YGR074W	CSN12	P47130	423 aa		3.97	□□□□□ -1.77
SMD1	YGR074W	SYT1	Q06836	1226 aa		3.97	□□□□□ -1.77
SMD1	YGR074W	YDR215C	Q12240	137 aa		3.97	□□□□□ -1.77
SMD1	YGR074W	STE6	P12866	1290 aa		3.96	□□□□□ -1.78
SMD1	YGR074W	LSB6	P42951	607 aa		3.96	□□□□□ -1.78
SMD1	YGR074W	HGH1	P48362	394 aa	Known RBP	3.95	□□□□□ -1.78
SMD1	YGR074W	KTR1	P27810	393 aa	Known RBP	3.94	□□□□□ -1.78
SMD1	YGR074W	DAL1	P32375	460 aa		3.94	□□□□□ -1.78
SMD1	YGR074W	DLD3	P39976	496 aa	Known RBP	3.94	□□□□□ -1.78
SMD1	YGR074W	AIM7	Q12156	149 aa		3.94	□□□□□ -1.78
SMD1	YGR074W	DIT1	P21623	536 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	GUT2	P32191	649 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	DMA2	P53924	522 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	ISU1	Q03020	165 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	RAD59	Q12223	238 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	YDR461C-A	Q2V2P7	80 aa		3.93	□□□□□ -1.78
SMD1	YGR074W	YMR265C	Q03508	461 aa	Known RBP	3.92	□□□□□ -1.78
SMD1	YGR074W	ATG20	Q07528	640 aa		3.92	□□□□□ -1.78
SMD1	YGR074W	MCA1	Q08601	432 aa		3.92	□□□□□ -1.78
SMD1	YGR074W	BOI2	P39969	1040 aa		3.91	□□□□□ -1.78
SMD1	YGR074W	KIN1	P13185	1064 aa		3.9	□□□□□ -1.79
SMD1	YGR074W	TAT1	P38085	619 aa		3.9	□□□□□ -1.79
SMD1	YGR074W	SLN1	P39928	1220 aa	Predicted RBP	3.9	□□□□□ -1.79
SMD1	YGR074W	STE20	Q03497	939 aa	Known RBP	3.9	□□□□□ -1.79
SMD1	YGR074W	UBP15	P50101	1230 aa		3.89	□□□□□ -1.79
SMD1	YGR074W	KRE33	P53914	1056 aa	Known RBP	3.89	□□□□□ -1.79
SMD1	YGR074W	YPR084W	Q06821	456 aa		3.89	□□□□□ -1.79
SMD1	YGR074W	SSA2	P10592	639 aa	Known RBP	3.88	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms