RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 PTPRKQ15262 1439 aa7.33□□□□□ -1.24
SCN3A-210ENST00000640652 BRD4O60885 1362 aaPredicted RBP7.33□□□□□ -1.24
SCN3A-210ENST00000640652 SMG6Q86US8 1419 aaKnown RBP7.33□□□□□ -1.24
SCN3A-210ENST00000640652 E9PCH4 1651 aa7.33□□□□□ -1.24
SCN3A-210ENST00000640652 NBR1Q14596 966 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 ABCC5O15440 1437 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 PDE3BQ13370 1112 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 NLRP13Q86W25 1043 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 UPF2Q9HAU5 1272 aaKnown RBP7.32□□□□□ -1.24
SCN3A-210ENST00000640652 NPM2Q86SE8 214 aaKnown RBP7.32□□□□□ -1.24
SCN3A-210ENST00000640652 TRPM1Q7Z4N2 1603 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 FAM135AQ9P2D6 1515 aa7.32□□□□□ -1.24
SCN3A-210ENST00000640652 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN3A-210ENST00000640652 MAST1Q9Y2H9 1570 aa7.31□□□□□ -1.24
SCN3A-210ENST00000640652 ADGRL2O95490 1459 aa7.31□□□□□ -1.24
SCN3A-210ENST00000640652 TMF1P82094 1093 aa7.31□□□□□ -1.24
SCN3A-210ENST00000640652 BCORL1Q5H9F3 1711 aa7.31□□□□□ -1.24
SCN3A-210ENST00000640652 LAMC1P11047 1609 aa7.3□□□□□ -1.24
SCN3A-210ENST00000640652 GPATCH8Q9UKJ3 1502 aaKnown RBP7.3□□□□□ -1.24
SCN3A-210ENST00000640652 AK9Q5TCS8 1911 aa7.3□□□□□ -1.24
SCN3A-210ENST00000640652 CACNA1FO60840 1977 aa7.29□□□□□ -1.24
SCN3A-210ENST00000640652 CEP170Q5SW79 1584 aa7.29□□□□□ -1.24
SCN3A-210ENST00000640652 RCAN3Q9UKA8 241 aa7.29□□□□□ -1.24
SCN3A-210ENST00000640652 IQGAP3Q86VI3 1631 aa7.29□□□□□ -1.24
SCN3A-210ENST00000640652 TCERG1O14776 1098 aaKnown RBP7.29□□□□□ -1.24
SCN3A-210ENST00000640652 BCL11AQ9H165 835 aa7.28□□□□□ -1.24
SCN3A-210ENST00000640652 DISP1Q96F81 1524 aa7.28□□□□□ -1.24
SCN3A-210ENST00000640652 PPM1GO15355 546 aaPredicted RBP7.28□□□□□ -1.24
SCN3A-210ENST00000640652 PRG4Q92954 1404 aaPredicted RBP7.28□□□□□ -1.24
SCN3A-210ENST00000640652 UNC13BO14795 1591 aa7.27□□□□□ -1.24
SCN3A-210ENST00000640652 PLXNC1O60486 1568 aa7.27□□□□□ -1.25
SCN3A-210ENST00000640652 IPO9Q96P70 1041 aaKnown RBP7.27□□□□□ -1.25
SCN3A-210ENST00000640652 WASHC2CQ9Y4E1 1318 aa7.27□□□□□ -1.25
SCN3A-210ENST00000640652 KAT6BQ8WYB5 2073 aa7.27□□□□□ -1.25
SCN3A-210ENST00000640652 DUOX2Q9NRD8 1548 aa7.27□□□□□ -1.25
SCN3A-210ENST00000640652 KDM5DQ9BY66 1539 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 ABCA8O94911 1581 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 BECN1Q14457 450 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 PLB1Q6P1J6 1458 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 SCAPERQ9BY12 1400 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 NEFMP07197 916 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 PTPRGP23470 1445 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 ZNF644Q9H582 1327 aaPredicted RBP7.26□□□□□ -1.25
SCN3A-210ENST00000640652 PZPP20742 1482 aa7.26□□□□□ -1.25
SCN3A-210ENST00000640652 SALL2Q9Y467 1007 aaPredicted RBP7.26□□□□□ -1.25
SCN3A-210ENST00000640652 KIAA1210Q9ULL0 1709 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 SYCP2Q9BX26 1530 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 ZNF608Q9ULD9 1512 aaPredicted RBP7.25□□□□□ -1.25
SCN3A-210ENST00000640652 ST20-MTHFSA0A0A6YYL1 179 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 USP35Q9P2H5 1018 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 RGL3Q3MIN7 710 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 JPH4Q96JJ6 628 aa7.25□□□□□ -1.25
SCN3A-210ENST00000640652 RRP1P56182 461 aaKnown RBP7.25□□□□□ -1.25
SCN3A-210ENST00000640652 SETD1BQ9UPS6 1966 aaKnown RBP7.25□□□□□ -1.25
SCN3A-210ENST00000640652 CFAP74Q9C0B2 1584 aa7.24□□□□□ -1.25
SCN3A-210ENST00000640652 KDM5BQ9UGL1 1544 aa7.24□□□□□ -1.25
SCN3A-210ENST00000640652 CC2D1BQ5T0F9 858 aaKnown RBP7.24□□□□□ -1.25
SCN3A-210ENST00000640652 TET3O43151 1660 aa7.24□□□□□ -1.25
SCN3A-210ENST00000640652 MS4A1P11836 297 aa7.23□□□□□ -1.25
SCN3A-210ENST00000640652 UHRF1BP1Q6BDS2 1440 aa7.23□□□□□ -1.25
SCN3A-210ENST00000640652 STAC3Q96MF2 364 aa7.23□□□□□ -1.25
SCN3A-210ENST00000640652 SYNMO15061 1565 aa7.23□□□□□ -1.25
SCN3A-210ENST00000640652 MBD5Q9P267 1494 aa7.23□□□□□ -1.25
SCN3A-210ENST00000640652 DEKP35659 375 aaKnown RBP7.23□□□□□ -1.25
SCN3A-210ENST00000640652 NUP160Q12769 1436 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 ZMYM4Q5VZL5 1548 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 ERBINQ96RT1 1412 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 SPATA31E1Q6ZUB1 1445 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 SAMD9LQ8IVG5 1584 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 IQGAP1P46940 1657 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 TTC37Q6PGP7 1564 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 NGEFQ8N5V2 710 aa7.22□□□□□ -1.25
SCN3A-210ENST00000640652 CFAP53Q96M91 514 aa7.21□□□□□ -1.25
SCN3A-210ENST00000640652 PRDM15P57071 1507 aaPredicted RBP7.21□□□□□ -1.25
SCN3A-210ENST00000640652 HNRNPMP52272 730 aaKnown RBP eCLIP7.21□□□□□ -1.26
SCN3A-210ENST00000640652 RNF17Q9BXT8 1623 aaKnown RBP7.21□□□□□ -1.26
SCN3A-210ENST00000640652 NBPF8Q3BBV2 869 aa7.2□□□□□ -1.26
SCN3A-210ENST00000640652 MAP2P11137 1827 aaKnown RBP7.2□□□□□ -1.26
SCN3A-210ENST00000640652 EFCAB2Q5VUJ9 269 aa7.2□□□□□ -1.26
SCN3A-210ENST00000640652 PRAG1Q86YV5 1406 aa7.2□□□□□ -1.26
SCN3A-210ENST00000640652 ZCCHC11Q5TAX3 1644 aaKnown RBP7.2□□□□□ -1.26
SCN3A-210ENST00000640652 EIF5BO60841 1220 aaKnown RBP7.2□□□□□ -1.26
SCN3A-210ENST00000640652 PNISRQ8TF01 805 aaKnown RBP7.2□□□□□ -1.26
SCN3A-210ENST00000640652 NINLQ9Y2I6 1382 aa7.19□□□□□ -1.26
SCN3A-210ENST00000640652 CENPQQ7L2Z9 268 aaPredicted RBP7.19□□□□□ -1.26
SCN3A-210ENST00000640652 COL17A1Q9UMD9 1497 aaPredicted RBP7.19□□□□□ -1.26
SCN3A-210ENST00000640652 QRICH2Q9H0J4 1663 aa7.19□□□□□ -1.26
SCN3A-210ENST00000640652 ASXL1Q8IXJ9 1541 aa7.19□□□□□ -1.26
SCN3A-210ENST00000640652 ABCC2Q92887 1545 aa7.18□□□□□ -1.26
SCN3A-210ENST00000640652 TCHHQ07283 1943 aa7.18□□□□□ -1.26
SCN3A-210ENST00000640652 FTSJ3Q8IY81 847 aaKnown RBP7.18□□□□□ -1.26
SCN3A-210ENST00000640652 SPAG9O60271 1321 aaKnown RBP7.18□□□□□ -1.26
SCN3A-210ENST00000640652 GOLGA2Q08379 1002 aa7.17□□□□□ -1.26
SCN3A-210ENST00000640652 ATP10BO94823 1461 aa7.17□□□□□ -1.26
SCN3A-210ENST00000640652 INSRP06213 1382 aa7.17□□□□□ -1.26
SCN3A-210ENST00000640652 HSP90AA1P07900 732 aaKnown RBP7.17□□□□□ -1.26
SCN3A-210ENST00000640652 NPM1P06748 294 aaKnown RBP eCLIP7.17□□□□□ -1.26
SCN3A-210ENST00000640652 PANK3Q9H999 370 aa7.16□□□□□ -1.26
SCN3A-210ENST00000640652 MAPK8IP3Q9UPT6 1336 aa7.16□□□□□ -1.26
SCN3A-210ENST00000640652 PARD3Q8TEW0 1356 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms