RNA–Protein interactions for RNA: ENST00000637533.1

MECP2-222, Transcript of methyl-CpG binding protein 2, human

TSL 5

Gene MECP2, Length 140 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MECP2-222	ENST00000637533	GIGYF2	Q6Y7W6	1299 aa	Known RBP	2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	SND1	Q7KZF4	910 aa	Known RBP eCLIP	2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	PARP9	Q8IXQ6	854 aa		2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	EFCAB3	Q8N7B9	438 aa		2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	FAM117A	Q9C073	453 aa		2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	TSPYL2	Q9H2G4	693 aa	Predicted RBP	2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	PLSCR2	Q9NRY7	297 aa		2.4	□□□□□ -2.03
MECP2-222	ENST00000637533	CLK2	P49760	499 aa	Known RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	FOXK1	P85037	733 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	GRIPAP1	Q4V328	841 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	TAF7L	Q5H9L4	462 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	RBM26	Q5T8P6	1007 aa	Known RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	RETREG2	Q8NC44	543 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	RGS22	Q8NE09	1264 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	L3MBTL3	Q96JM7	780 aa	Predicted RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	USP35	Q9P2H5	1018 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	RBM27	Q9P2N5	1060 aa	Known RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	ZNF777	Q9ULD5	760 aa	Predicted RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	RBM19	Q9Y4C8	960 aa	Known RBP	2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	NDUFB9	Q9Y6M9	179 aa		2.39	□□□□□ -2.03
MECP2-222	ENST00000637533	LZTS3	O60299	673 aa	Predicted RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	ONECUT3	O60422	494 aa	Predicted RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	MNX1	P50219	401 aa	Predicted RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	USP46	P62068	366 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	EIF4G2	P78344	907 aa	Known RBP eCLIP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	SOGA3	Q5TF21	947 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	NUTM1	Q86Y26	1132 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	CCDC125	Q86Z20	511 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	HELB	Q8NG08	1087 aa	Predicted RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	RBM46	Q8TBY0	533 aa	Known RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	SIRT1	Q96EB6	747 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	KCNH8	Q96L42	1107 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	C8orf37	Q96NL8	207 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	PHF8	Q9UPP1	1060 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	GNE	Q9Y223	722 aa	Known RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	FARP1	Q9Y4F1	1045 aa	Predicted RBP	2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	NCKAP5L	Q9HCH0	1330 aa		2.38	□□□□□ -2.03
MECP2-222	ENST00000637533	PLEKHG3	A1L390	1219 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	GRXCR2	A6NFK2	248 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	DPYSL4	O14531	572 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	ARID4A	P29374	1257 aa	Predicted RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	SSTR3	P32745	418 aa	Predicted RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	GNL2	Q13823	731 aa	Known RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	RTL5	Q5HYW3	569 aa	Predicted RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	PRPF38B	Q5VTL8	546 aa	Known RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	PPP2R2D	Q66LE6	453 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	REM2	Q8IYK8	340 aa	Predicted RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	ANKRD13A	Q8IZ07	590 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	FNBP4	Q8N3X1	1017 aa	Predicted RBP	2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	CLUAP1	Q96AJ1	413 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	DRC1	Q96MC2	740 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	PCDHB8	Q9UN66	801 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	CCDC61	Q9Y6R9	512 aa		2.37	□□□□□ -2.03
MECP2-222	ENST00000637533	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	RBM47	A0AV96	593 aa	Known RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	PSD	A5PKW4	1024 aa	Predicted RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	KDM4A	O75164	1064 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	TIE1	P35590	1138 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	HDGF	P51858	240 aa	Known RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	CNGB1	Q14028	1251 aa	Predicted RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	COL19A1	Q14993	1142 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	RNF135	Q8IUD6	432 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	UBXN4	Q92575	508 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	CCDC136	Q96JN2	1154 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	BEGAIN	Q9BUH8	593 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	VRTN	Q9H8Y1	702 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	COG6	Q9Y2V7	657 aa		2.36	□□□□□ -2.03
MECP2-222	ENST00000637533	PHF14	O94880	888 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	ATG7	O95352	703 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	TCF3	P15923	654 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	IBSP	P21815	317 aa	Predicted RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	VAMP1	P23763	118 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	RFC5	P40937	340 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	MLLT3	P42568	568 aa	Predicted RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	ZC3H6	P61129	1189 aa	Known RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	PTGDR	Q13258	359 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	SEMA3F	Q13275	785 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	ELOA	Q14241	798 aa	Known RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	IER5L	Q5T953	404 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	DIEXF	Q68CQ4	756 aa	Known RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	FAM9A	Q8IZU1	332 aa	Predicted RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	NFATC2IP	Q8NCF5	419 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	PROCA1	Q8NCQ7	364 aa	Predicted RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	SREK1	Q8WXA9	508 aa	Known RBP	2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	GLMN	Q92990	594 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	C1orf115	Q9H7X2	142 aa		2.35	□□□□□ -2.03
MECP2-222	ENST00000637533	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	2.35	□□□□□ -2.03	2e-6	■■■■■ 88.3
MECP2-222	ENST00000637533	NUTM2B	A6NNL0	878 aa	Predicted RBP	2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	NUTM2E	B1AL46	878 aa	Predicted RBP	2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	MAP3K7	O43318	606 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	EIF5B	O60841	1220 aa	Known RBP	2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	RFX1	P22670	979 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	ABL2	P42684	1182 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	NUTM2D	Q5VT03	806 aa	Predicted RBP	2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	TYW1B	Q6NUM6	668 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	TRIM50	Q86XT4	487 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	IFNL1	Q8IU54	200 aa		2.34	□□□□□ -2.03
MECP2-222	ENST00000637533	NUTM2A	Q8IVF1	878 aa	Predicted RBP	2.34	□□□□□ -2.03

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